Gene info for Dshi_2060 in Dinoroseobacter shibae DFL-12

Updated annotation (from data): Aconitate hydratase (EC 4.2.1.3)
Rationale: Specifically important for utilizing Trisodium citrate dihydrate. Automated validation from mutant phenotype: the predicted function (4.2.1.3) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: aconitate hydratase 2 (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 57145, + strand, nucleotides 2,178,310 to 2,181,102
See nucleotide sequence around Dshi_2060 or for all of scaffold 57145

Other databases: MicrobesOnline, NCBI, IMG: 2501023941, uniprot: A8LPU3

Nearby Genes

500 ntDshi_2055 and Dshi_2056 are separated by 210 nucleotidesDshi_2056 and Dshi_2057 are separated by 125 nucleotidesDshi_2057 and Dshi_2058 are separated by 4 nucleotidesDshi_2058 and Dshi_2059 overlap by 23 nucleotidesDshi_2059 and Dshi_2060 are separated by 501 nucleotidesDshi_2060 and Dshi_2061 are separated by 310 nucleotidesDshi_2061 and Dshi_2062 are separated by 159 nucleotidesDshi_2062 and Dshi_2063 overlap by 4 nucleotidesDshi_2063 and Dshi_2064 are separated by 32 nucleotidesDshi_2064 and Dshi_2065 are separated by 75 nucleotides Dshi_2055: Dshi_2055 - glutathione peroxidase (RefSeq), at 2,174,739 to 2,175,272 _2055 Dshi_2056: Dshi_2056 - NUDIX hydrolase (RefSeq), at 2,175,483 to 2,175,962 _2056 Dshi_2057: Dshi_2057 - protein of unknown function DUF1178 (RefSeq), at 2,176,088 to 2,176,564 _2057 Dshi_2058: Dshi_2058 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,176,569 to 2,177,234 _2058 Dshi_2059: Dshi_2059 - hypothetical protein (RefSeq), at 2,177,212 to 2,177,808 _2059 Dshi_2060: Dshi_2060 - Aconitate hydratase (EC 4.2.1.3) (from data), at 2,178,310 to 2,181,102 _2060 Dshi_2061: Dshi_2061 - aspartate kinase (RefSeq), at 2,181,413 to 2,182,651 _2061 Dshi_2062: Dshi_2062 - PTSINtr with GAF domain, PtsP (RefSeq), at 2,182,811 to 2,185,054 _2062 Dshi_2063: Dshi_2063 - von Willebrand factor type A (RefSeq), at 2,185,051 to 2,185,806 _2063 Dshi_2064: Dshi_2064 - GCN5-related N-acetyltransferase (RefSeq), at 2,185,839 to 2,186,339 _2064 Dshi_2065: Dshi_2065 - flavin reductase-like, FMN-binding (RefSeq), at 2,186,415 to 2,187,020 _2065
Locus Name Description Strand Phenotype
Dshi_2055 Dshi_2055 glutathione peroxidase (RefSeq) - insig.
Dshi_2056 Dshi_2056 NUDIX hydrolase (RefSeq) + insig.
Dshi_2057 Dshi_2057 protein of unknown function DUF1178 (RefSeq) + insig.
Dshi_2058 Dshi_2058 short-chain dehydrogenase/reductase SDR (RefSeq) + insig.
Dshi_2059 Dshi_2059 hypothetical protein (RefSeq) + insig.
Dshi_2060 Dshi_2060 Aconitate hydratase (EC 4.2.1.3) (from data) + strong
Dshi_2061 Dshi_2061 aspartate kinase (RefSeq) + no data
Dshi_2062 Dshi_2062 PTSINtr with GAF domain, PtsP (RefSeq) + strong
Dshi_2063 Dshi_2063 von Willebrand factor type A (RefSeq) - insig.
Dshi_2064 Dshi_2064 GCN5-related N-acetyltransferase (RefSeq) - no data
Dshi_2065 Dshi_2065 flavin reductase-like, FMN-binding (RefSeq) + sig.

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