Gene info for Dshi_2000 in Dinoroseobacter shibae DFL-12

Updated annotation (from data): xylitol ABC transporter, periplasmic substrate-binding protein
Rationale: Specific phenotype: utilization of Xylitol. May also be a glucose transporter (weak phenotypes, and a close homolog is a glucose transporter) and a xylose transporter (Dino grows poorly on xylose, so there’s no fitness data, but this is 66% identical to a glucose/xylose transporter from Agrobacterium)
Original annotation: D-xylose ABC transporter, periplasmic substrate-binding protein (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 57145, - strand, nucleotides 2,119,423 to 2,120,445
See nucleotide sequence around Dshi_2000 or for all of scaffold 57145

Other databases: MicrobesOnline, NCBI, IMG: 2501023881, uniprot: A8LP57

Nearby Genes

500 ntDshi_1995 and Dshi_1996 are separated by 130 nucleotidesDshi_1996 and Dshi_1997 overlap by 4 nucleotidesDshi_1997 and Dshi_1998 overlap by 1 nucleotidesDshi_1998 and Dshi_1999 overlap by 4 nucleotidesDshi_1999 and Dshi_2000 are separated by 117 nucleotidesDshi_2000 and Dshi_2001 are separated by 212 nucleotidesDshi_2001 and Dshi_2002 overlap by 4 nucleotidesDshi_2002 and Dshi_2003 are separated by 466 nucleotidesDshi_2003 and Dshi_2004 overlap by 29 nucleotidesDshi_2004 and Dshi_2005 are separated by 172 nucleotides Dshi_1995: Dshi_1995 - hypothetical protein (RefSeq), at 2,113,662 to 2,114,381 _1995 Dshi_1996: Dshi_1996 - xylose isomerase (RefSeq), at 2,114,512 to 2,115,816 _1996 Dshi_1997: Dshi_1997 - Xylulose kinase (EC 2.7.1.17) (from data), at 2,115,813 to 2,117,255 _1997 Dshi_1998: Dshi_1998 - ABC transporter related (RefSeq), at 2,117,255 to 2,118,001 _1998 Dshi_1999: Dshi_1999 - inner-membrane translocator (RefSeq), at 2,117,998 to 2,119,305 _1999 Dshi_2000: Dshi_2000 - xylitol ABC transporter, periplasmic substrate-binding protein (from data), at 2,119,423 to 2,120,445 _2000 Dshi_2001: Dshi_2001 - ROK family protein (RefSeq), at 2,120,658 to 2,121,902 _2001 Dshi_2002: Dshi_2002 - FG-GAP repeat domain protein (RefSeq), at 2,121,899 to 2,123,377 _2002 Dshi_2003: Dshi_2003 - twin-arginine translocation pathway signal (RefSeq), at 2,123,844 to 2,124,359 _2003 Dshi_2004: Dshi_2004 - Ferric reductase domain protein transmembrane component domain (RefSeq), at 2,124,331 to 2,124,954 _2004 Dshi_2005: Dshi_2005 - Di-haem cytochrome c peroxidase (RefSeq), at 2,125,127 to 2,126,482 _2005
Locus Name Description Strand Phenotype
Dshi_1995 Dshi_1995 hypothetical protein (RefSeq) + sig.
Dshi_1996 Dshi_1996 xylose isomerase (RefSeq) - insig.
Dshi_1997 Dshi_1997 Xylulose kinase (EC 2.7.1.17) (from data) - strong
Dshi_1998 Dshi_1998 ABC transporter related (RefSeq) - sig.
Dshi_1999 Dshi_1999 inner-membrane translocator (RefSeq) - strong
Dshi_2000 Dshi_2000 xylitol ABC transporter, periplasmic substrate-binding protein (from data) - strong
Dshi_2001 Dshi_2001 ROK family protein (RefSeq) + insig.
Dshi_2002 Dshi_2002 FG-GAP repeat domain protein (RefSeq) + insig.
Dshi_2003 Dshi_2003 twin-arginine translocation pathway signal (RefSeq) + insig.
Dshi_2004 Dshi_2004 Ferric reductase domain protein transmembrane component domain (RefSeq) + insig.
Dshi_2005 Dshi_2005 Di-haem cytochrome c peroxidase (RefSeq) - insig.

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