Gene info for Dshi_0829 in Dinoroseobacter shibae DFL-12

Updated annotation (from data): Phosphopentomutase (EC 5.4.2.7)
Rationale: Specifically important for utilizing Adenosine. Automated validation from mutant phenotype: the predicted function (PPENTOMUT-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: phosphopentomutase (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 57145, + strand, nucleotides 837,056 to 838,255
See nucleotide sequence around Dshi_0829 or for all of scaffold 57145

Other databases: MicrobesOnline, NCBI, IMG: 2501022691, uniprot: A8LRC4

Nearby Genes

500 ntDshi_0824 and Dshi_0825 are separated by 135 nucleotidesDshi_0825 and Dshi_0826 are separated by 180 nucleotidesDshi_0826 and Dshi_0827 are separated by 173 nucleotidesDshi_0827 and Dshi_0828 overlap by 4 nucleotidesDshi_0828 and Dshi_0829 overlap by 4 nucleotidesDshi_0829 and Dshi_0830 overlap by 4 nucleotidesDshi_0830 and Dshi_0831 overlap by 4 nucleotidesDshi_0831 and Dshi_0832 are separated by 0 nucleotidesDshi_0832 and Dshi_0833 are separated by 464 nucleotidesDshi_0833 and Dshi_0834 are separated by 93 nucleotides Dshi_0824: Dshi_0824 - histidine kinase (RefSeq), at 829,172 to 830,701 _0824 Dshi_0825: Dshi_0825 - AMP-dependent synthetase and ligase (RefSeq), at 830,837 to 832,729 _0825 Dshi_0826: Dshi_0826 - malic protein NAD-binding (RefSeq), at 832,910 to 835,189 _0826 Dshi_0827: Dshi_0827 - cytidine deaminase (RefSeq), at 835,363 to 835,755 _0827 Dshi_0828: Dshi_0828 - pyrimidine-nucleoside phosphorylase (RefSeq), at 835,752 to 837,059 _0828 Dshi_0829: Dshi_0829 - Phosphopentomutase (EC 5.4.2.7) (from data), at 837,056 to 838,255 _0829 Dshi_0830: Dshi_0830 - Adenosine deaminase (EC 3.5.4.4) (from data), at 838,252 to 839,247 _0830 Dshi_0831: Dshi_0831 - uracil phosphoribosyltransferase (RefSeq), at 839,244 to 839,876 _0831 Dshi_0832: Dshi_0832 - hypothetical protein (RefSeq), at 839,877 to 840,893 _0832 Dshi_0833: Dshi_0833 - AMP-dependent synthetase and ligase (RefSeq), at 841,358 to 842,983 _0833 Dshi_0834: Dshi_0834 - protein of unknown function DUF6 transmembrane (RefSeq), at 843,077 to 843,994 _0834
Locus Name Description Strand Phenotype
Dshi_0824 Dshi_0824 histidine kinase (RefSeq) - cofit
Dshi_0825 Dshi_0825 AMP-dependent synthetase and ligase (RefSeq) - insig.
Dshi_0826 Dshi_0826 malic protein NAD-binding (RefSeq) - strong
Dshi_0827 Dshi_0827 cytidine deaminase (RefSeq) + insig.
Dshi_0828 Dshi_0828 pyrimidine-nucleoside phosphorylase (RefSeq) + strong
Dshi_0829 Dshi_0829 Phosphopentomutase (EC 5.4.2.7) (from data) + sig.
Dshi_0830 Dshi_0830 Adenosine deaminase (EC 3.5.4.4) (from data) + sig.
Dshi_0831 Dshi_0831 uracil phosphoribosyltransferase (RefSeq) + sig.
Dshi_0832 Dshi_0832 hypothetical protein (RefSeq) - strong
Dshi_0833 Dshi_0833 AMP-dependent synthetase and ligase (RefSeq) - insig.
Dshi_0834 Dshi_0834 protein of unknown function DUF6 transmembrane (RefSeq) + insig.

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