Gene info for Dshi_0549 in Dinoroseobacter shibae DFL-12

Updated annotation (from data): ABC transporter for Xylitol, permease component 2
Rationale: Specific phenotypes on Xylitol; Xylitol. Phenotype is very specific
Original annotation: binding-protein-dependent transport systems inner membrane component (RefSeq)
Type 1: Protein-coding gene
Located on scaffold 57145, + strand, nucleotides 536,359 to 537,177
See nucleotide sequence around Dshi_0549 or for all of scaffold 57145

Other databases: MicrobesOnline, NCBI, IMG: 2501022404, uniprot: A8LPH2

Nearby Genes

500 ntDshi_0544 and Dshi_0545 are separated by 52 nucleotidesDshi_0545 and Dshi_0546 are separated by 9 nucleotidesDshi_0546 and Dshi_0547 are separated by 160 nucleotidesDshi_0547 and Dshi_0548 are separated by 74 nucleotidesDshi_0548 and Dshi_0549 are separated by 3 nucleotidesDshi_0549 and Dshi_0550 are separated by 68 nucleotidesDshi_0550 and Dshi_0551 are separated by 19 nucleotidesDshi_0551 and Dshi_0552 overlap by 4 nucleotidesDshi_0552 and Dshi_0553 are separated by 3 nucleotidesDshi_0553 and Dshi_0554 are separated by 518 nucleotides Dshi_0544: Dshi_0544 - hypothetical protein (RefSeq), at 531,843 to 532,091 _0544 Dshi_0545: Dshi_0545 - HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq), at 532,144 to 532,884 _0545 Dshi_0546: Dshi_0546 - ABC transporter for Xylitol, ATPase component (from data), at 532,894 to 533,910 _0546 Dshi_0547: Dshi_0547 - ABC transporter for Xylitol, periplasmic substrate-binding component (from data), at 534,071 to 535,414 _0547 Dshi_0548: Dshi_0548 - ABC transporter for Xylitol, permease component 1 (from data), at 535,489 to 536,355 _0548 Dshi_0549: Dshi_0549 - ABC transporter for Xylitol, permease component 2 (from data), at 536,359 to 537,177 _0549 Dshi_0550: Dshi_0550 - transcriptional regulator, DeoR family (RefSeq), at 537,246 to 538,217 _0550 Dshi_0551: Dshi_0551 - D-xylulose reductase (EC 1.1.1.9) (from data), at 538,237 to 539,280 _0551 Dshi_0552: Dshi_0552 - sugar isomerase (SIS) (RefSeq), at 539,277 to 539,843 _0552 Dshi_0553: Dshi_0553 - short-chain dehydrogenase/reductase SDR (RefSeq), at 539,847 to 540,614 _0553 Dshi_0554: Dshi_0554 - short-chain dehydrogenase/reductase SDR (RefSeq), at 541,133 to 541,858 _0554
Locus Name Description Strand Phenotype
Dshi_0544 Dshi_0544 hypothetical protein (RefSeq) + insig.
Dshi_0545 Dshi_0545 HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq) - insig.
Dshi_0546 Dshi_0546 ABC transporter for Xylitol, ATPase component (from data) - strong
Dshi_0547 Dshi_0547 ABC transporter for Xylitol, periplasmic substrate-binding component (from data) + strong
Dshi_0548 Dshi_0548 ABC transporter for Xylitol, permease component 1 (from data) + strong
Dshi_0549 Dshi_0549 ABC transporter for Xylitol, permease component 2 (from data) + strong
Dshi_0550 Dshi_0550 transcriptional regulator, DeoR family (RefSeq) + strong
Dshi_0551 Dshi_0551 D-xylulose reductase (EC 1.1.1.9) (from data) + strong
Dshi_0552 Dshi_0552 sugar isomerase (SIS) (RefSeq) + insig.
Dshi_0553 Dshi_0553 short-chain dehydrogenase/reductase SDR (RefSeq) + cofit
Dshi_0554 Dshi_0554 short-chain dehydrogenase/reductase SDR (RefSeq) + insig.

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