Gene info for BT4187 in Bacteroides thetaiotaomicron VPI-5482

Updated annotation (from data): exo-alpha-D-galacturonosidase for catabolism of rhamnogalacturonan I and polygalacturonate
Rationale: Specifically important in carbon source Rhamnogalacturonan - from potato; carbon source polygalacturonic acid. Rhamnogalacturonan I is a polymer of D-galacturonate and L-rhamnose. This protein is 64% identical to BT4123, which is an exo-alpha-D-galacturonidase (PMC:PMC5784806). BT4187 is expected to be secreted, but no specific signal for protein export was identified by PSORT-b.
Original annotation: exo-poly-alpha-D-galacturonosidase precursor (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 241, - strand, nucleotides 5,521,399 to 5,523,015
See nucleotide sequence around BT4187 or for all of scaffold 241

Other databases: MicrobesOnline, NCBI, refseq: BT_RS21125, uniprot: Q8A034

Nearby Genes

500 ntBT4182 and BT4183 are separated by 344 nucleotidesBT4183 and BT4184 are separated by 112 nucleotidesBT4184 and BT4185 are separated by 73 nucleotidesBT4185 and BT4186 are separated by 164 nucleotidesBT4186 and BT4187 are separated by 151 nucleotidesBT4187 and BT4188 are separated by 349 nucleotidesBT4188 and BT4189 are separated by 6 nucleotidesBT4189 and BT4190 are separated by 40 nucleotidesBT4190 and BT4191 overlap by 35 nucleotidesBT4191 and BT4192 are separated by 57 nucleotides BT4182: BT4182 - two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file), at 5,511,384 to 5,515,679 BT4182 BT4183: BT4183 - pectate lyase L precursor (NCBI ptt file), at 5,516,024 to 5,517,337 BT4183 BT4184: BT4184 - phosphoglycolate phosphatase (NCBI ptt file), at 5,517,450 to 5,518,100 BT4184 BT4185: BT4185 - xylosidase/arabinosidase (NCBI ptt file), at 5,518,174 to 5,519,850 BT4185 BT4186: BT4186 - hypothetical protein (NCBI ptt file), at 5,520,015 to 5,521,247 BT4186 BT4187: BT4187 - exo-alpha-D-galacturonosidase for catabolism of rhamnogalacturonan I and polygalacturonate (from data), at 5,521,399 to 5,523,015 BT4187 BT4188: BT4188 - enoyl-[acyl-carrier-protein] reductase (NCBI ptt file), at 5,523,365 to 5,524,222 BT4188 BT4189: BT4189 - conserved hypothetical protein (NCBI ptt file), at 5,524,229 to 5,525,236 BT4189 BT4190: BT4190 - putative S-adenosylmethionine-dependent methytransferase (NCBI ptt file), at 5,525,277 to 5,525,981 BT4190 BT4191: BT4191 - hypothetical protein (NCBI ptt file), at 5,525,947 to 5,527,068 BT4191 BT4192: BT4192 - lipoic acid synthetase (NCBI ptt file), at 5,527,126 to 5,527,974 BT4192
Locus Name Description Strand Phenotype
BT4182 BT4182 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) - insig.
BT4183 BT4183 pectate lyase L precursor (NCBI ptt file) + insig.
BT4184 BT4184 phosphoglycolate phosphatase (NCBI ptt file) - insig.
BT4185 BT4185 xylosidase/arabinosidase (NCBI ptt file) - insig.
BT4186 BT4186 hypothetical protein (NCBI ptt file) - sig.
BT4187 BT4187 exo-alpha-D-galacturonosidase for catabolism of rhamnogalacturonan I and polygalacturonate (from data) - strong
BT4188 BT4188 enoyl-[acyl-carrier-protein] reductase (NCBI ptt file) + no data
BT4189 BT4189 conserved hypothetical protein (NCBI ptt file) + strong
BT4190 BT4190 putative S-adenosylmethionine-dependent methytransferase (NCBI ptt file) + sig.
BT4191 BT4191 hypothetical protein (NCBI ptt file) - strong
BT4192 BT4192 lipoic acid synthetase (NCBI ptt file) - strong

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