Gene info for SO_r001 in Shewanella oneidensis MR-1

Name: Sp16SC
Annotation: 16S ribosomal RNA (RefSeq)
Type 3: 16S (small subunit) ribosomal RNA
Located on scaffold 139, + strand, nucleotides 46,116 to 47,644
See nucleotide sequence around SO_r001 or for all of scaffold 139

Other databases: MicrobesOnline

Nearby Genes

500 ntSO0039 and aroE are separated by 189 nucleotidesaroE and SO0041 are separated by 25 nucleotidesSO0041 and SO0042 are separated by 91 nucleotidesSO0042 and SO0043 are separated by 313 nucleotidesSO0043 and Sp16SC are separated by 164 nucleotidesSp16SC and Sp23SC are separated by 316 nucleotidesSp23SC and Sp5SC are separated by 203 nucleotidesSp5SC and tRNA-Asp-1 are separated by 34 nucleotidestRNA-Asp-1 and SO0044 are separated by 440 nucleotidesSO0044 and SO0045 are separated by 24 nucleotides SO0039: SO0039 - hypothetical globin (NCBI ptt file), at 43,090 to 43,527 SO0039 SO0040: aroE - shikimate 5-dehydrogenase (NCBI ptt file), at 43,717 to 44,580 aroE SO0041: SO0041 - conserved hypothetical protein (NCBI ptt file), at 44,606 to 44,881 SO0041 SO0042: SO0042 - carbonic anhydrase, family 3 (NCBI ptt file), at 44,973 to 45,521 SO0042 SO0043: SO0043 - hypothetical protein (NCBI ptt file), at 45,835 to 45,951 SO0043 SO_r001: Sp16SC - 16S ribosomal RNA (RefSeq), at 46,116 to 47,644 Sp16SC SO_r002: Sp23SC - 23S ribosomal RNA (RefSeq), at 47,961 to 50,853 Sp23SC SO_r003: Sp5SC - 5S ribosomal RNA (RefSeq), at 51,057 to 51,176 Sp5SC SO_t001: tRNA-Asp-1 - tRNA-Asp (RefSeq), at 51,211 to 51,287 tRNA-Asp-1 SO0044: SO0044 - conserved hypothetical protein (NCBI ptt file), at 51,728 to 51,979 SO0044 SO0045: SO0045 - Rrf2 family protein (NCBI ptt file), at 52,004 to 52,459 SO0045
Locus Name Description Strand Phenotype
SO0039 SO0039 hypothetical globin (NCBI ptt file) - sig.
SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) + strong
SO0041 SO0041 conserved hypothetical protein (NCBI ptt file) + insig.
SO0042 SO0042 carbonic anhydrase, family 3 (NCBI ptt file) - sig.
SO0043 SO0043 hypothetical protein (NCBI ptt file) + no data
SO_r001 Sp16SC 16S ribosomal RNA (RefSeq) + no data
SO_r002 Sp23SC 23S ribosomal RNA (RefSeq) + no data
SO_r003 Sp5SC 5S ribosomal RNA (RefSeq) + no data
SO_t001 tRNA-Asp-1 tRNA-Asp (RefSeq) + no data
SO0044 SO0044 conserved hypothetical protein (NCBI ptt file) + insig.
SO0045 SO0045 Rrf2 family protein (NCBI ptt file) + insig.

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