Gene info for SO3961 in Shewanella oneidensis MR-1

Name: rpoN
Annotation: RNA polymerase sigma-54 factor (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, + strand, nucleotides 4,102,103 to 4,103,578
See nucleotide sequence around SO3961 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EAE5

Nearby Genes

500 ntSO3956 and SO3957 overlap by 1 nucleotidesSO3957 and SO3958 overlap by 4 nucleotidesSO3958 and SO3959 overlap by 14 nucleotidesSO3959 and SO3960 overlap by 4 nucleotidesSO3960 and rpoN are separated by 106 nucleotidesrpoN and yfiA-3 are separated by 28 nucleotidesyfiA-3 and ptsN are separated by 2 nucleotidesptsN and SO3964 overlap by 4 nucleotidesSO3964 and ptsO overlap by 14 nucleotidesptsO and mgtE-2 are separated by 196 nucleotides SO3956: SO3956 - carbohydrate isomerase, KpsF/GutQ family (NCBI ptt file), at 4,098,645 to 4,099,622 SO3956 SO3957: SO3957 - conserved hypothetical protein (NCBI ptt file), at 4,099,622 to 4,100,173 SO3957 SO3958: SO3958 - conserved hypothetical protein (NCBI ptt file), at 4,100,170 to 4,100,730 SO3958 SO3959: SO3959 - conserved hypothetical protein (NCBI ptt file), at 4,100,717 to 4,101,268 SO3959 SO3960: SO3960 - ABC transporter, ATP-binding protein (NCBI ptt file), at 4,101,265 to 4,101,996 SO3960 SO3961: rpoN - RNA polymerase sigma-54 factor (NCBI ptt file), at 4,102,103 to 4,103,578 rpoN SO3962: yfiA-3 - ribosomal subunit interface protein (NCBI ptt file), at 4,103,607 to 4,103,894 yfiA-3 SO3963: ptsN - nitrogen regulatory IIA protein (NCBI ptt file), at 4,103,897 to 4,104,340 ptsN SO3964: SO3964 - conserved hypothetical protein (NCBI ptt file), at 4,104,337 to 4,105,191 SO3964 SO3965: ptsO - phosphocarrier protein NPR (NCBI ptt file), at 4,105,178 to 4,105,453 ptsO SO3966: mgtE-2 - magnesium transporter (NCBI ptt file), at 4,105,650 to 4,107,014 mgtE-2
Locus Name Description Strand Phenotype
SO3956 SO3956 carbohydrate isomerase, KpsF/GutQ family (NCBI ptt file) + no data
SO3957 SO3957 conserved hypothetical protein (NCBI ptt file) + no data
SO3958 SO3958 conserved hypothetical protein (NCBI ptt file) + no data
SO3959 SO3959 conserved hypothetical protein (NCBI ptt file) + no data
SO3960 SO3960 ABC transporter, ATP-binding protein (NCBI ptt file) + no data
SO3961 rpoN RNA polymerase sigma-54 factor (NCBI ptt file) + strong
SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) + sig.
SO3963 ptsN nitrogen regulatory IIA protein (NCBI ptt file) + strong
SO3964 SO3964 conserved hypothetical protein (NCBI ptt file) + strong
SO3965 ptsO phosphocarrier protein NPR (NCBI ptt file) + sig.
SO3966 mgtE-2 magnesium transporter (NCBI ptt file) + strong

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