Gene info for SO3342 in Shewanella oneidensis MR-1

Updated annotation (from data): putative transporter, required for L-alanine utilization
Rationale: PFam PF03458.9 (UPF0126). conserved specific phenotype of UPF0126
Original annotation: conserved hypothetical protein (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, - strand, nucleotides 3,489,167 to 3,489,808
See nucleotide sequence around SO3342 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EC03

Nearby Genes

500 ntSO3337 and ybjU are separated by 233 nucleotidesybjU and SO3339 are separated by 285 nucleotidesSO3339 and SO3340 are separated by 31 nucleotidesSO3340 and SO3341 are separated by 111 nucleotidesSO3341 and SO3342 are separated by 36 nucleotidesSO3342 and SO3343 are separated by 352 nucleotidesSO3343 and SO3344 are separated by 180 nucleotidesSO3344 and SO3345 are separated by 150 nucleotidesSO3345 and SO3346 are separated by 335 nucleotidesSO3346 and SO3347 are separated by 27 nucleotides SO3337: SO3337 - conserved domain protein (NCBI ptt file), at 3,484,043 to 3,485,443 SO3337 SO3338: ybjU - L-allo-threonine aldolase (NCBI ptt file), at 3,485,677 to 3,486,690 ybjU SO3339: SO3339 - OmpA family protein (NCBI ptt file), at 3,486,976 to 3,487,566 SO3339 SO3340: SO3340 - hypothetical Small-conductance mechanosensitive channel (NCBI ptt file), at 3,487,598 to 3,488,425 SO3340 SO3341: SO3341 - antioxidant, AhpC/TSA family (NCBI ptt file), at 3,488,537 to 3,489,130 SO3341 SO3342: SO3342 - putative transporter, required for L-alanine utilization (from data), at 3,489,167 to 3,489,808 SO3342 SO3343: SO3343 - conserved hypothetical protein (NCBI ptt file), at 3,490,161 to 3,490,721 SO3343 SO3344: SO3344 - hypothetical protein (NCBI ptt file), at 3,490,902 to 3,491,216 SO3344 SO3345: SO3345 - translation initiation factor, putative (NCBI ptt file), at 3,491,367 to 3,491,696 SO3345 SO3346: SO3346 - conserved hypothetical protein (NCBI ptt file), at 3,492,032 to 3,492,595 SO3346 SO3347: SO3347 - conserved hypothetical protein TIGR00250 (NCBI ptt file), at 3,492,623 to 3,493,048 SO3347
Locus Name Description Strand Phenotype
SO3337 SO3337 conserved domain protein (NCBI ptt file) - insig.
SO3338 ybjU L-allo-threonine aldolase (NCBI ptt file) - insig.
SO3339 SO3339 OmpA family protein (NCBI ptt file) + insig.
SO3340 SO3340 hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) + strong
SO3341 SO3341 antioxidant, AhpC/TSA family (NCBI ptt file) + insig.
SO3342 SO3342 putative transporter, required for L-alanine utilization (from data) - strong
SO3343 SO3343 conserved hypothetical protein (NCBI ptt file) - insig.
SO3344 SO3344 hypothetical protein (NCBI ptt file) + insig.
SO3345 SO3345 translation initiation factor, putative (NCBI ptt file) + strong
SO3346 SO3346 conserved hypothetical protein (NCBI ptt file) + insig.
SO3347 SO3347 conserved hypothetical protein TIGR00250 (NCBI ptt file) + no data

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