Gene info for SO2398 in Shewanella oneidensis MR-1

Name: pyrF
Annotation: orotidine 5`-phosphate decarboxylase (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, - strand, nucleotides 2,502,432 to 2,503,127
See nucleotide sequence around SO2398 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EEI4

Nearby Genes

500 ntSO2393 and dacB are separated by 25 nucleotidesdacB and SO2395 are separated by 60 nucleotidesSO2395 and SO2396 are separated by 221 nucleotidesSO2396 and SO2397 are separated by 45 nucleotidesSO2397 and pyrF are separated by 65 nucleotidespyrF and SO2399 are separated by 42 nucleotidesSO2399 and SO2400 are separated by 1 nucleotidesSO2400 and ihfB are separated by 122 nucleotidesihfB and rpsA are separated by 72 nucleotidesrpsA and cmk are separated by 102 nucleotides SO2393: SO2393 - hypothetical protein (NCBI ptt file), at 2,497,186 to 2,497,362 SO2393 SO2394: dacB - penicillin-binding protein 4 (NCBI ptt file), at 2,497,388 to 2,498,911 dacB SO2395: SO2395 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data), at 2,498,972 to 2,500,729 SO2395 SO2396: SO2396 - conserved hypothetical protein (NCBI ptt file), at 2,500,951 to 2,501,493 SO2396 SO2397: SO2397 - oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file), at 2,501,539 to 2,502,366 SO2397 SO2398: pyrF - orotidine 5`-phosphate decarboxylase (NCBI ptt file), at 2,502,432 to 2,503,127 pyrF SO2399: SO2399 - conserved hypothetical protein (NCBI ptt file), at 2,503,170 to 2,504,330 SO2399 SO2400: SO2400 - conserved hypothetical protein (NCBI ptt file), at 2,504,332 to 2,504,607 SO2400 SO2401: ihfB - integration host factor, beta subunit (NCBI ptt file), at 2,504,730 to 2,505,017 ihfB SO2402: rpsA - ribosomal protein S1 (NCBI ptt file), at 2,505,090 to 2,506,757 rpsA SO2403: cmk - cytidylate kinase (NCBI ptt file), at 2,506,860 to 2,507,552 cmk
Locus Name Description Strand Phenotype
SO2393 SO2393 hypothetical protein (NCBI ptt file) + insig.
SO2394 dacB penicillin-binding protein 4 (NCBI ptt file) + insig.
SO2395 SO2395 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) - sig.
SO2396 SO2396 conserved hypothetical protein (NCBI ptt file) - insig.
SO2397 SO2397 oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file) - insig.
SO2398 pyrF orotidine 5`-phosphate decarboxylase (NCBI ptt file) - strong
SO2399 SO2399 conserved hypothetical protein (NCBI ptt file) - no data
SO2400 SO2400 conserved hypothetical protein (NCBI ptt file) - no data
SO2401 ihfB integration host factor, beta subunit (NCBI ptt file) - no data
SO2402 rpsA ribosomal protein S1 (NCBI ptt file) - no data
SO2403 cmk cytidylate kinase (NCBI ptt file) - no data

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