Gene info for SO1962 in Shewanella oneidensis MR-1

Updated annotation (from data): 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
Rationale: Specifically important for utilizing L-Phenylalanine. Automated validation from mutant phenotype: the predicted function (RXN-10815) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: 4-hydroxyphenylpyruvate dioxygenase (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, - strand, nucleotides 2,067,510 to 2,068,550
See nucleotide sequence around SO1962 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EFK9

Nearby Genes

500 ntSO1957 and SO1958 are separated by 24 nucleotidesSO1958 and SO1959 are separated by 89 nucleotidesSO1959 and SO1960 overlap by 4 nucleotidesSO1960 and maa are separated by 460 nucleotidesmaa and SO1962 are separated by 87 nucleotidesSO1962 and SO1963 are separated by 120 nucleotidesSO1963 and SO1964 overlap by 7 nucleotidesSO1964 and SO1965 are separated by 123 nucleotidesSO1965 and SO1966 are separated by 148 nucleotidesSO1966 and SO1967 are separated by 120 nucleotides SO1957: SO1957 - conserved hypothetical protein (NCBI ptt file), at 2,063,278 to 2,064,438 SO1957 SO1958: SO1958 - conserved hypothetical protein (NCBI ptt file), at 2,064,463 to 2,064,924 SO1958 SO1959: SO1959 - ABC transporter, periplasmic substrate-binding protein, putative (NCBI ptt file), at 2,065,014 to 2,065,925 SO1959 SO1960: SO1960 - conserved hypothetical protein (NCBI ptt file), at 2,065,922 to 2,066,383 SO1960 SO1961: maa - maltose O-acetyltransferase (NCBI ptt file), at 2,066,844 to 2,067,422 maa SO1962: SO1962 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data), at 2,067,510 to 2,068,550 SO1962 SO1963: SO1963 - Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data), at 2,068,671 to 2,069,831 SO1963 SO1964: SO1964 - hypothetical protein (NCBI ptt file), at 2,069,825 to 2,069,926 SO1964 SO1965: SO1965 - transcriptional regulator, LysR family (NCBI ptt file), at 2,070,050 to 2,070,964 SO1965 SO1966: SO1966 - conserved hypothetical protein TIGR00266 (NCBI ptt file), at 2,071,113 to 2,071,907 SO1966 SO1967: SO1967 - hypothetical protein (NCBI ptt file), at 2,072,028 to 2,073,293 SO1967
Locus Name Description Strand Phenotype
SO1957 SO1957 conserved hypothetical protein (NCBI ptt file) + insig.
SO1958 SO1958 conserved hypothetical protein (NCBI ptt file) + insig.
SO1959 SO1959 ABC transporter, periplasmic substrate-binding protein, putative (NCBI ptt file) + insig.
SO1960 SO1960 conserved hypothetical protein (NCBI ptt file) + insig.
SO1961 maa maltose O-acetyltransferase (NCBI ptt file) + insig.
SO1962 SO1962 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) - strong
SO1963 SO1963 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) - strong
SO1964 SO1964 hypothetical protein (NCBI ptt file) + strong
SO1965 SO1965 transcriptional regulator, LysR family (NCBI ptt file) + strong
SO1966 SO1966 conserved hypothetical protein TIGR00266 (NCBI ptt file) + insig.
SO1967 SO1967 hypothetical protein (NCBI ptt file) - insig.

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