Gene info for SO1812 in Shewanella oneidensis MR-1

Name: mdeA
Updated annotation (from data): Methionine gamma-lyase (EC 4.4.1.11)
Rationale: Specifically important for utilizing L-Methionine. Automated validation from mutant phenotype: the predicted function (4.4.1.11) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: methionine gamma-lyase (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, + strand, nucleotides 1,902,200 to 1,903,393
See nucleotide sequence around SO1812 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EG02

Nearby Genes

500 ntpspA and pspB are separated by 17 nucleotidespspB and pspC overlap by 14 nucleotidespspC and SO1810 are separated by 114 nucleotidesSO1810 and SO1811 overlap by 4 nucleotidesSO1811 and mdeA are separated by 284 nucleotidesmdeA and SO1813 are separated by 213 nucleotidesSO1813 and SO1814 are separated by 471 nucleotidesSO1814 and SO1815 are separated by 21 nucleotidesSO1815 and SO1816 are separated by 5 nucleotidesSO1816 and SO1817 are separated by 9 nucleotides SO1807: pspA - phage shock protein A (NCBI ptt file), at 1,897,828 to 1,898,511 pspA SO1808: pspB - phage shock protein B (NCBI ptt file), at 1,898,529 to 1,898,768 pspB SO1809: pspC - phage shock protein C (NCBI ptt file), at 1,898,755 to 1,899,141 pspC SO1810: SO1810 - hypothetical ATPase (NCBI ptt file), at 1,899,256 to 1,900,713 SO1810 SO1811: SO1811 - conserved hypothetical protein (NCBI ptt file), at 1,900,710 to 1,901,915 SO1811 SO1812: mdeA - Methionine gamma-lyase (EC 4.4.1.11) (from data), at 1,902,200 to 1,903,393 mdeA SO1813: SO1813 - DNA-binding protein, putative (NCBI ptt file), at 1,903,607 to 1,903,972 SO1813 SO1814: SO1814 - hypothetical protein (NCBI ptt file), at 1,904,444 to 1,904,722 SO1814 SO1815: SO1815 - histone deacetylase/AcuC/AphA family protein (NCBI ptt file), at 1,904,744 to 1,905,658 SO1815 SO1816: SO1816 - conserved hypothetical protein (NCBI ptt file), at 1,905,664 to 1,906,344 SO1816 SO1817: SO1817 - primosomal replication protein n'', putative (NCBI ptt file), at 1,906,354 to 1,907,022 SO1817
Locus Name Description Strand Phenotype
SO1807 pspA phage shock protein A (NCBI ptt file) + sig.
SO1808 pspB phage shock protein B (NCBI ptt file) + sig.
SO1809 pspC phage shock protein C (NCBI ptt file) + strong
SO1810 SO1810 hypothetical ATPase (NCBI ptt file) + insig.
SO1811 SO1811 conserved hypothetical protein (NCBI ptt file) + insig.
SO1812 mdeA Methionine gamma-lyase (EC 4.4.1.11) (from data) + strong
SO1813 SO1813 DNA-binding protein, putative (NCBI ptt file) + insig.
SO1814 SO1814 hypothetical protein (NCBI ptt file) - no data
SO1815 SO1815 histone deacetylase/AcuC/AphA family protein (NCBI ptt file) - strong
SO1816 SO1816 conserved hypothetical protein (NCBI ptt file) - sig.
SO1817 SO1817 primosomal replication protein n'', putative (NCBI ptt file) - strong

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