Gene info for SO1679 in Shewanella oneidensis MR-1

Updated annotation (from data): 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5)
Rationale: Specifically important in carbon source L-Isoleucine; nitrogen source L-Isoleucine (EC 1.3.8.5). Similar to ACAD8_HUMAN (Isobutyryl-CoA dehydrogenase, mitochondrial).
Original annotation: acyl-CoA dehydrogenase family protein (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, + strand, nucleotides 1,766,172 to 1,767,329
See nucleotide sequence around SO1679 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EGC5

Nearby Genes

500 ntSO1674 and SO1675 are separated by 174 nucleotidesSO1675 and metA are separated by 69 nucleotidesmetA and atoB are separated by 430 nucleotidesatoB and mmsA are separated by 136 nucleotidesmmsA and SO1679 are separated by 162 nucleotidesSO1679 and SO1680 are separated by 52 nucleotidesSO1680 and SO1681 overlap by 1 nucleotidesSO1681 and mmsB are separated by 83 nucleotidesmmsB and SO1683 are separated by 24 nucleotidesSO1683 and SO1685 are separated by 207 nucleotides SO1674: SO1674 - short chain dehydrogenase family protein (NCBI ptt file), at 1,760,446 to 1,761,189 SO1674 SO1675: SO1675 - conserved hypothetical protein (NCBI ptt file), at 1,761,364 to 1,761,741 SO1675 SO1676: metA - homoserine O-succinyltransferase (NCBI ptt file), at 1,761,811 to 1,762,752 metA SO1677: atoB - 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) (from data), at 1,763,183 to 1,764,373 atoB SO1678: mmsA - methylmalonate-semialdehyde dehydrogenase (NCBI ptt file), at 1,764,510 to 1,766,009 mmsA SO1679: SO1679 - 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data), at 1,766,172 to 1,767,329 SO1679 SO1680: SO1680 - enoyl-CoA hydratase/isomerase family protein (NCBI ptt file), at 1,767,382 to 1,768,155 SO1680 SO1681: SO1681 - enoyl-CoA hydratase/isomerase family protein (NCBI ptt file), at 1,768,155 to 1,769,306 SO1681 SO1682: mmsB - 3-hydroxyisobutyrate dehydrogenase (NCBI ptt file), at 1,769,390 to 1,770,292 mmsB SO1683: SO1683 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase IvdG (EC:1.1.1.178) (from data), at 1,770,317 to 1,771,075 SO1683 SO1685: SO1685 - hypothetical protein (NCBI ptt file), at 1,771,283 to 1,771,534 SO1685
Locus Name Description Strand Phenotype
SO1674 SO1674 short chain dehydrogenase family protein (NCBI ptt file) - sig.
SO1675 SO1675 conserved hypothetical protein (NCBI ptt file) + sig.
SO1676 metA homoserine O-succinyltransferase (NCBI ptt file) + strong
SO1677 atoB 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) (from data) + strong
SO1678 mmsA methylmalonate-semialdehyde dehydrogenase (NCBI ptt file) + strong
SO1679 SO1679 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) + strong
SO1680 SO1680 enoyl-CoA hydratase/isomerase family protein (NCBI ptt file) + strong
SO1681 SO1681 enoyl-CoA hydratase/isomerase family protein (NCBI ptt file) + strong
SO1682 mmsB 3-hydroxyisobutyrate dehydrogenase (NCBI ptt file) + strong
SO1683 SO1683 3-hydroxy-2-methylbutyryl-CoA dehydrogenase IvdG (EC:1.1.1.178) (from data) + strong
SO1685 SO1685 hypothetical protein (NCBI ptt file) + no data

Or browse nearby genes

Or see the comparative fitness browser