Gene info for SO1219 in Shewanella oneidensis MR-1

Name: deoB
Updated annotation (from data): Phosphopentomutase (EC 5.4.2.7)
Rationale: Specifically important for utilizing Adenosine. Automated validation from mutant phenotype: the predicted function (PPENTOMUT-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: phosphopentomutase (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, + strand, nucleotides 1,266,092 to 1,267,306
See nucleotide sequence around SO1219 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EHK2

Nearby Genes

500 ntSO1213 and SO1214 are separated by 176 nucleotidesSO1214 and SO1215 are separated by 333 nucleotidesSO1215 and deoC are separated by 413 nucleotidesdeoC and deoA are separated by 184 nucleotidesdeoA and deoB are separated by 9 nucleotidesdeoB and deoD-2 are separated by 91 nucleotidesdeoD-2 and SO1222 are separated by 167 nucleotidesSO1222 and serB are separated by 79 nucleotidesserB and SO1224 are separated by 101 nucleotidesSO1224 and SO1225 are separated by 12 nucleotides SO1213: SO1213 - hydrolase, TatD family (NCBI ptt file), at 1,259,952 to 1,260,722 SO1213 SO1214: SO1214 - NupC family protein (NCBI ptt file), at 1,260,899 to 1,262,197 SO1214 SO1215: SO1215 - outer membrane protein OmpK, putative (NCBI ptt file), at 1,262,531 to 1,263,382 SO1215 SO1217: deoC - deoxyribose-phosphate aldolase (NCBI ptt file), at 1,263,796 to 1,264,566 deoC SO1218: deoA - thymidine phosphorylase (NCBI ptt file), at 1,264,751 to 1,266,082 deoA SO1219: deoB - Phosphopentomutase (EC 5.4.2.7) (from data), at 1,266,092 to 1,267,306 deoB SO1221: deoD-2 - purine nucleoside phosphorylase (NCBI ptt file), at 1,267,398 to 1,268,108 deoD-2 SO1222: SO1222 - hypothetical protein (NCBI ptt file), at 1,268,276 to 1,269,499 SO1222 SO_1223: serB - phosphoserine phosphatase (RefSeq), at 1,269,579 to 1,270,571 serB SO1224: SO1224 - conserved hypothetical protein (NCBI ptt file), at 1,270,673 to 1,271,659 SO1224 SO1225: SO1225 - conserved hypothetical protein (NCBI ptt file), at 1,271,672 to 1,274,050 SO1225
Locus Name Description Strand Phenotype
SO1213 SO1213 hydrolase, TatD family (NCBI ptt file) + insig.
SO1214 SO1214 NupC family protein (NCBI ptt file) + strong
SO1215 SO1215 outer membrane protein OmpK, putative (NCBI ptt file) + strong
SO1217 deoC deoxyribose-phosphate aldolase (NCBI ptt file) + strong
SO1218 deoA thymidine phosphorylase (NCBI ptt file) + strong
SO1219 deoB Phosphopentomutase (EC 5.4.2.7) (from data) + strong
SO1221 deoD-2 purine nucleoside phosphorylase (NCBI ptt file) + strong
SO1222 SO1222 hypothetical protein (NCBI ptt file) - insig.
SO_1223 serB phosphoserine phosphatase (RefSeq) + strong
SO1224 SO1224 conserved hypothetical protein (NCBI ptt file) + insig.
SO1225 SO1225 conserved hypothetical protein (NCBI ptt file) - insig.

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