Gene info for SO1115 in Shewanella oneidensis MR-1

Name: pepD
Updated annotation (from data): dipeptidase (EC 3.4.13.-)
Rationale: Specific phenotype: utilization of Gly-DL-Asp
Original annotation: aminoacyl-histidine dipeptidase (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, - strand, nucleotides 1,158,327 to 1,159,787
See nucleotide sequence around SO1115 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EHU8

Nearby Genes

500 ntbfr2 and bfr1 are separated by 9 nucleotidesbfr1 and SO1112.1 are separated by 336 nucleotidesSO1112.1 and SO_1113 are separated by 6 nucleotidesSO_1113 and dinP are separated by 175 nucleotidesdinP and pepD are separated by 95 nucleotidespepD and SO1116 are separated by 50 nucleotidesSO1116 and SO1117 overlap by 30 nucleotidesSO1117 and SO1120 are separated by 993 nucleotidesSO1120 and proB are separated by 176 nucleotidesproB and proA are separated by 12 nucleotides SO1111: bfr2 - bacterioferritin subunit 2 (NCBI ptt file), at 1,153,719 to 1,154,192 bfr2 SO1112: bfr1 - bacterioferritin subunit 1 (NCBI ptt file), at 1,154,202 to 1,154,669 bfr1 SO1112.1: SO1112.1 - hypothetical chemotactic transducer (NCBI ptt file), at 1,155,006 to 1,156,508 SO1112.1 SO_1113: SO_1113 - no description, at 1,156,515 to 1,156,982 _1113 SO1114: dinP - DNA-damage-inducible protein P (NCBI ptt file), at 1,157,158 to 1,158,231 dinP SO1115: pepD - dipeptidase (EC 3.4.13.-) (from data), at 1,158,327 to 1,159,787 pepD SO1116: SO1116 - hypothetical protein (NCBI ptt file), at 1,159,838 to 1,160,035 SO1116 SO1117: SO1117 - cytosol aminopeptidase, putative (NCBI ptt file), at 1,160,006 to 1,161,559 SO1117 SO1120: SO1120 - xanthine/uracil permease family protein (NCBI ptt file), at 1,162,553 to 1,163,842 SO1120 SO1121: proB - glutamate 5-kinase (NCBI ptt file), at 1,164,019 to 1,165,137 proB SO1122: proA - gamma-glutamyl phosphate reductase (NCBI ptt file), at 1,165,150 to 1,166,427 proA
Locus Name Description Strand Phenotype
SO1111 bfr2 bacterioferritin subunit 2 (NCBI ptt file) + insig.
SO1112 bfr1 bacterioferritin subunit 1 (NCBI ptt file) + insig.
SO1112.1 SO1112.1 hypothetical chemotactic transducer (NCBI ptt file) + insig.
SO_1113 SO_1113 no description + insig.
SO1114 dinP DNA-damage-inducible protein P (NCBI ptt file) + insig.
SO1115 pepD dipeptidase (EC 3.4.13.-) (from data) - strong
SO1116 SO1116 hypothetical protein (NCBI ptt file) - no data
SO1117 SO1117 cytosol aminopeptidase, putative (NCBI ptt file) + insig.
SO1120 SO1120 xanthine/uracil permease family protein (NCBI ptt file) + insig.
SO1121 proB glutamate 5-kinase (NCBI ptt file) + strong
SO1122 proA gamma-glutamyl phosphate reductase (NCBI ptt file) + strong

Or browse nearby genes

Or see the comparative fitness browser