Gene info for SO0627 in Shewanella oneidensis MR-1

Annotation: putative 2'-5' RNA ligase (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, - strand, nucleotides 652,739 to 653,296
See nucleotide sequence around SO0627 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EJ46

Nearby Genes

500 ntSO0621 and SO0622 overlap by 4 nucleotidesSO0622 and SO0623 overlap by 20 nucleotidesSO0623 and crp are separated by 82 nucleotidescrp and SO0625 are separated by 419 nucleotidesSO0625 and SO0627 are separated by 159 nucleotidesSO0627 and SO0628 are separated by 171 nucleotidesSO0628 and nosA are separated by 206 nucleotidesnosA and hrpB are separated by 208 nucleotideshrpB and mrcB are separated by 77 nucleotidesmrcB and ppiC-1 are separated by 77 nucleotides SO0621: SO0621 - sensor histidine kinase (NCBI ptt file), at 648,335 to 649,663 SO0621 SO0622: SO0622 - DNA-binding response regulator (NCBI ptt file), at 649,660 to 650,334 SO0622 SO0623: SO0623 - hypothetical protein (NCBI ptt file), at 650,315 to 650,662 SO0623 SO0624: crp - catabolite gene activator (NCBI ptt file), at 650,745 to 651,380 crp SO0625: SO0625 - conserved domain protein (NCBI ptt file), at 651,800 to 652,579 SO0625 SO0627: SO0627 - putative 2'-5' RNA ligase (NCBI ptt file), at 652,739 to 653,296 SO0627 SO0628: SO0628 - GGDEF domain protein (NCBI ptt file), at 653,468 to 655,654 SO0628 SO0630: nosA - TonB-dependent receptor (NCBI ptt file), at 655,861 to 657,867 nosA SO0632: hrpB - ATP-dependent helicase HrpB (NCBI ptt file), at 658,076 to 660,583 hrpB SO0633: mrcB - penicillin-binding protein 1B (NCBI ptt file), at 660,661 to 662,967 mrcB SO0635: ppiC-1 - peptidyl-prolyl cis-trans isomerase C (NCBI ptt file), at 663,045 to 663,323 ppiC-1
Locus Name Description Strand Phenotype
SO0621 SO0621 sensor histidine kinase (NCBI ptt file) - strong
SO0622 SO0622 DNA-binding response regulator (NCBI ptt file) - insig.
SO0623 SO0623 hypothetical protein (NCBI ptt file) - sig.
SO0624 crp catabolite gene activator (NCBI ptt file) - strong
SO0625 SO0625 conserved domain protein (NCBI ptt file) + insig.
SO0627 SO0627 putative 2'-5' RNA ligase (NCBI ptt file) - insig.
SO0628 SO0628 GGDEF domain protein (NCBI ptt file) + insig.
SO0630 nosA TonB-dependent receptor (NCBI ptt file) + insig.
SO0632 hrpB ATP-dependent helicase HrpB (NCBI ptt file) + insig.
SO0633 mrcB penicillin-binding protein 1B (NCBI ptt file) + strong
SO0635 ppiC-1 peptidyl-prolyl cis-trans isomerase C (NCBI ptt file) + insig.

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