Gene info for SO0619 in Shewanella oneidensis MR-1

Name: astD
Updated annotation (from data): Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Rationale: Specifically important for utilizing L-Arginine. Automated validation from mutant phenotype: the predicted function (SUCCGLUALDDEHYD-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: succinylglutamic semialdehyde dehydrogenase (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, + strand, nucleotides 645,826 to 647,289
See nucleotide sequence around SO0619 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EJ54

Nearby Genes

500 ntSO0614 and SO0615 are separated by 187 nucleotidesSO0615 and SO0616 are separated by 55 nucleotidesSO0616 and argD are separated by 308 nucleotidesargD and astA are separated by 126 nucleotidesastA and astD are separated by 9 nucleotidesastD and SO0620 are separated by 167 nucleotidesSO0620 and SO0621 are separated by 74 nucleotidesSO0621 and SO0622 overlap by 4 nucleotidesSO0622 and SO0623 overlap by 20 nucleotidesSO0623 and crp are separated by 82 nucleotides SO0614: SO0614 - dipeptidyl peptidase IV, putative (NCBI ptt file), at 638,364 to 640,844 SO0614 SO0615: SO0615 - hypothetical protein (NCBI ptt file), at 641,032 to 642,177 SO0615 SO0616: SO0616 - esterase, putative (NCBI ptt file), at 642,233 to 643,144 SO0616 SO0617: argD - acetylornithine aminotransferase (NCBI ptt file), at 643,453 to 644,670 argD SO0618: astA - arginine N-succinyltransferase (NCBI ptt file), at 644,797 to 645,816 astA SO0619: astD - Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) (from data), at 645,826 to 647,289 astD SO0620: SO0620 - conserved hypothetical protein (NCBI ptt file), at 647,457 to 648,260 SO0620 SO0621: SO0621 - sensor histidine kinase (NCBI ptt file), at 648,335 to 649,663 SO0621 SO0622: SO0622 - DNA-binding response regulator (NCBI ptt file), at 649,660 to 650,334 SO0622 SO0623: SO0623 - hypothetical protein (NCBI ptt file), at 650,315 to 650,662 SO0623 SO0624: crp - catabolite gene activator (NCBI ptt file), at 650,745 to 651,380 crp
Locus Name Description Strand Phenotype
SO0614 SO0614 dipeptidyl peptidase IV, putative (NCBI ptt file) + insig.
SO0615 SO0615 hypothetical protein (NCBI ptt file) + insig.
SO0616 SO0616 esterase, putative (NCBI ptt file) + sig.
SO0617 argD acetylornithine aminotransferase (NCBI ptt file) + strong
SO0618 astA arginine N-succinyltransferase (NCBI ptt file) + strong
SO0619 astD Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) (from data) + strong
SO0620 SO0620 conserved hypothetical protein (NCBI ptt file) + sig.
SO0621 SO0621 sensor histidine kinase (NCBI ptt file) - strong
SO0622 SO0622 DNA-binding response regulator (NCBI ptt file) - insig.
SO0623 SO0623 hypothetical protein (NCBI ptt file) - sig.
SO0624 crp catabolite gene activator (NCBI ptt file) - strong

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