Gene info for SO0402 in Shewanella oneidensis MR-1

Annotation: transcriptional regulator, LysR family (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, + strand, nucleotides 415,596 to 416,525
See nucleotide sequence around SO0402 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EJR0

Nearby Genes

500 ntfdrC and frdA are separated by 65 nucleotidesfrdA and frdB overlap by 1 nucleotidesfrdB and SO0400 are separated by 63 nucleotidesSO0400 and SO0401 overlap by 4 nucleotidesSO0401 and SO0402 are separated by 119 nucleotidesSO0402 and SO0403 are separated by 785 nucleotidesSO0403 and SO0404 are separated by 22 nucleotidesSO0404 and rho are separated by 112 nucleotidesrho and trxA are separated by 212 nucleotidestrxA and SO0407 are separated by 151 nucleotides SO0397: fdrC - fumarate reductase cytochrome B subunit (NCBI ptt file), at 410,644 to 411,315 fdrC SO0398: frdA - fumarate reductase flavoprotein subunit (NCBI ptt file), at 411,381 to 413,387 frdA SO0399: frdB - fumarate reductase iron-sulfur protein (NCBI ptt file), at 413,387 to 414,118 frdB SO0400: SO0400 - conserved hypothetical protein (NCBI ptt file), at 414,182 to 414,466 SO0400 SO0401: SO0401 - alcohol dehydrogenase, zinc-containing (NCBI ptt file), at 414,463 to 415,476 SO0401 SO0402: SO0402 - transcriptional regulator, LysR family (NCBI ptt file), at 415,596 to 416,525 SO0402 SO0403: SO0403 - hypothetical protein (NCBI ptt file), at 417,311 to 418,180 SO0403 SO0404: SO0404 - hypothetical protein (NCBI ptt file), at 418,203 to 421,661 SO0404 SO0405: rho - transcription termination factor Rho (NCBI ptt file), at 421,774 to 423,039 rho SO0406: trxA - thioredoxin 1 (NCBI ptt file), at 423,252 to 423,578 trxA SO0407: SO0407 - ATP-dependent RNA helicase, DEAD box family (NCBI ptt file), at 423,730 to 425,049 SO0407
Locus Name Description Strand Phenotype
SO0397 fdrC fumarate reductase cytochrome B subunit (NCBI ptt file) + sig.
SO0398 frdA fumarate reductase flavoprotein subunit (NCBI ptt file) + sig.
SO0399 frdB fumarate reductase iron-sulfur protein (NCBI ptt file) + insig.
SO0400 SO0400 conserved hypothetical protein (NCBI ptt file) - insig.
SO0401 SO0401 alcohol dehydrogenase, zinc-containing (NCBI ptt file) - insig.
SO0402 SO0402 transcriptional regulator, LysR family (NCBI ptt file) + strong
SO0403 SO0403 hypothetical protein (NCBI ptt file) + strong
SO0404 SO0404 hypothetical protein (NCBI ptt file) + strong
SO0405 rho transcription termination factor Rho (NCBI ptt file) - no data
SO0406 trxA thioredoxin 1 (NCBI ptt file) - no data
SO0407 SO0407 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) + strong

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