Gene info for SO0256 in Shewanella oneidensis MR-1

Name: rpoA
Annotation: DNA-directed RNA polymerase, alpha subunit (NCBI ptt file)
Type 1: Protein-coding gene
Located on scaffold 139, + strand, nucleotides 257,763 to 258,752
See nucleotide sequence around SO0256 or for all of scaffold 139

Other databases: MicrobesOnline, NCBI, uniprot: Q8EK47

Nearby Genes

500 ntsecY and rpmJ are separated by 21 nucleotidesrpmJ and rpsM are separated by 114 nucleotidesrpsM and rpsK are separated by 14 nucleotidesrpsK and rpsD are separated by 31 nucleotidesrpsD and rpoA are separated by 24 nucleotidesrpoA and rplQ are separated by 40 nucleotidesrplQ and SO0258 are separated by 348 nucleotidesSO0258 and SO0258.1 are separated by 254 nucleotidesSO0258.1 and ccmE are separated by 387 nucleotidesccmE and ccmD overlap by 4 nucleotides SO0251: secY - preprotein translocase, SecY subunit (NCBI ptt file), at 254,733 to 256,073 secY SO0252: rpmJ - ribosomal protein L36 (NCBI ptt file), at 256,095 to 256,208 rpmJ SO0253: rpsM - ribosomal protein S13 (NCBI ptt file), at 256,323 to 256,679 rpsM SO0254: rpsK - ribosomal protein S11 (NCBI ptt file), at 256,694 to 257,086 rpsK SO0255: rpsD - ribosomal protein S4 (NCBI ptt file), at 257,118 to 257,738 rpsD SO0256: rpoA - DNA-directed RNA polymerase, alpha subunit (NCBI ptt file), at 257,763 to 258,752 rpoA SO0257: rplQ - ribosomal protein L17 (NCBI ptt file), at 258,793 to 259,188 rplQ SO0258: SO0258 - hypothetical protein (NCBI ptt file), at 259,537 to 259,692 SO0258 SO0258.1: SO0258.1 - putative transposase (NCBI ptt file), at 259,947 to 260,153 SO0258.1 SO0259: ccmE - cytochrome c biogenesis protein CcmE (NCBI ptt file), at 260,541 to 261,026 ccmE SO0260: ccmD - heme exporter protein CcmD (NCBI ptt file), at 261,023 to 261,223 ccmD
Locus Name Description Strand Phenotype
SO0251 secY preprotein translocase, SecY subunit (NCBI ptt file) + no data
SO0252 rpmJ ribosomal protein L36 (NCBI ptt file) + no data
SO0253 rpsM ribosomal protein S13 (NCBI ptt file) + no data
SO0254 rpsK ribosomal protein S11 (NCBI ptt file) + no data
SO0255 rpsD ribosomal protein S4 (NCBI ptt file) + no data
SO0256 rpoA DNA-directed RNA polymerase, alpha subunit (NCBI ptt file) + no data
SO0257 rplQ ribosomal protein L17 (NCBI ptt file) + no data
SO0258 SO0258 hypothetical protein (NCBI ptt file) + no data
SO0258.1 SO0258.1 putative transposase (NCBI ptt file) + insig.
SO0259 ccmE cytochrome c biogenesis protein CcmE (NCBI ptt file) - strong
SO0260 ccmD heme exporter protein CcmD (NCBI ptt file) - no data

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