Experiments in Bacteroides thetaiotaomicron VPI-5482 for carbon source
Name | Group | Condition | Description |
---|---|---|---|
set31S43 | carbon source | (+)-Arabinogalactan | (+)-Arabinogalactan; autoclaved 5 mg/ml (C) |
set31S44 | carbon source | (+)-Arabinogalactan | (+)-Arabinogalactan; autoclaved 5 mg/ml (C) |
set31S45 | carbon source | (+)-Arabinogalactan | (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) |
set31S47 | carbon source | (+)-Arabinogalactan | (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) |
set3IT007 | carbon source | (+)-Arabinogalactan | (+)-Arabinogalactan (C) |
set3IT023 | carbon source | (+)-Arabinogalactan | (+)-Arabinogalactan (C) |
set27S325 | carbon source | (+)-Arabinogalactan, Larch wood | carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml |
set27S326 | carbon source | (+)-Arabinogalactan, Larch wood | carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml |
set27S327 | carbon source | (+)-Arabinogalactan, Larch wood | carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml |
set27S328 | carbon source | (+)-Arabinogalactan, Larch wood | carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml |
set11IT059 | carbon source | 1,4-B-D-Galactobiose | 1,4-B-D-Galactobiose (C) |
set11IT074 | carbon source | 1,4-B-D-Galactobiose | 1,4-B-D-Galactobiose (C) |
set11IT054 | carbon source | 6-O-Acetyl-D-glucose | 6-O-Acetyl-D-glucose (C) |
set11IT069 | carbon source | 6-O-Acetyl-D-glucose | 6-O-Acetyl-D-glucose (C) |
set1IT087 | carbon source | a-Cyclodextrin | a-Cyclodextrin (C) |
set2IT015 | carbon source | a-Cyclodextrin | a-Cyclodextrin (C) |
set31S61 | carbon source | a-Cyclodextrin | a-Cyclodextrin 2.5 mg/ml (C) |
set31S62 | carbon source | a-Cyclodextrin | a-Cyclodextrin 2.5 mg/ml (C) |
set27S330 | carbon source | a1-Acid Glycoprotein from bovine plasma | carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml |
set16IT042 | carbon source | Agro_defined_trehalose | Agro_defined_trehalose 1x (C) |
set31S19 | carbon source | amylopectin from maize | amylopectin from maize; autoclaved 2.5 mg/ml (C) |
set31S20 | carbon source | amylopectin from maize | amylopectin from maize; autoclaved 2.5 mg/ml (C) |
set3IT039 | carbon source | amylopectin from maize | amylopectin from maize |
set3IT049 | carbon source | amylopectin from maize | amylopectin from maize |
set4IT042 | carbon source | amylopectin from maize | amylopectin from maize (C) |
set4IT043 | carbon source | amylopectin from maize | amylopectin from maize (C) |
set31S3 | carbon source | Amylopectin from Potato | Amylopectin from Potato; autoclaved 2.5 mg/ml (C) |
set31S4 | carbon source | Amylopectin from Potato | Amylopectin from Potato; autoclaved 2.5 mg/ml (C) |
set31S5 | carbon source | Amylopectin from Potato | Amylopectin from Potato; autoclaved 2.5 mg/ml (C) |
set31S6 | carbon source | Amylopectin from Potato | Amylopectin from Potato; autoclaved 2.5 mg/ml (C) |
set3IT047 | carbon source | Amylose from potato | Amylose from potato |
set3IT057 | carbon source | Amylose from potato | Amylose from potato |
set31S7 | carbon source | b-Glucan from Beet (1,2-b-Glucan) | b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) |
set31S8 | carbon source | b-Glucan from Beet (1,2-b-Glucan) | b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) |
set32S100 | carbon source | B-glucan from yeast | B-glucan from yeast; autoclaved 2.5 mg/ml (C) |
set32S99 | carbon source | B-glucan from yeast | B-glucan from yeast; autoclaved 2.5 mg/ml (C) |
set31S23 | carbon source | beta-Cyclodextrin | beta-Cyclodextrin 2.5 mg/ml (C) |
set31S24 | carbon source | beta-Cyclodextrin | beta-Cyclodextrin 2.5 mg/ml (C) |
set1IT078 | carbon source | Beta-Lactose | Beta-Lactose (C) |
set2IT007 | carbon source | Beta-Lactose | Beta-Lactose (C) |
set32S119 | carbon source | Beta-Lactose | Beta-Lactose 2.5 mg/ml (C) |
set32S120 | carbon source | Beta-Lactose | Beta-Lactose 2.5 mg/ml (C) |
set31S51 | carbon source | Chondroitin sulfate A sodium salt from bovine trachea | Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) |
set31S52 | carbon source | Chondroitin sulfate A sodium salt from bovine trachea | Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) |
set3IT008 | carbon source | Chondroitin sulfate A sodium salt from bovine trachea | Chondroitin sulfate A from bovine trachea (C) |
set3IT024 | carbon source | Chondroitin sulfate A sodium salt from bovine trachea | Chondroitin sulfate A from bovine trachea (C) |
set1IT074 | carbon source | D-Arabinose | D-Arabinose (C) |
set2IT004 | carbon source | D-Arabinose | D-Arabinose (C) |
set1IT079 | carbon source | D-Fructose | D-Fructose (C) |
set2IT008 | carbon source | D-Fructose | D-Fructose (C) |
set31S65 | carbon source | D-Fructose | D-Fructose 2.5 mg/ml (C) |
set31S66 | carbon source | D-Fructose | D-Fructose 2.5 mg/ml (C) |
set1IT092 | carbon source | D-Galactose | D-Galactose (C) |
set2IT019 | carbon source | D-Galactose | D-Galactose (C) |
set31S67 | carbon source | D-Galactose | D-Galactose 2.5 mg/ml (C) |
set31S68 | carbon source | D-Galactose | D-Galactose 2.5 mg/ml (C) |
set1IT088 | carbon source | D-Galacturonic Acid monohydrate | D-Galacturonic Acid (C) |
set1IT096 | carbon source | D-Galacturonic Acid monohydrate | D-Galacturonic Acid (C) |
set1IT095 | carbon source | D-Glucosamine Hydrochloride | D-Glucosamine Hydrochloride (C) |
set16IT038 | carbon source | D-Glucose | D-Glucose 20mM (C) |
set16IT044 | carbon source | D-Glucose | D-Glucose 20mM (C) |
set1IT071 | carbon source | D-Glucose | D-Glucose (C) |
set1IT072 | carbon source | D-Glucose | D-Glucose (C) |
set1IT073 | carbon source | D-Glucose | D-Glucose (C) |
set1IT083 | carbon source | D-Glucose | D-Glucose (C) |
set26IT064 | carbon source | D-Glucose | D-Glucose (C) |
set26IT065 | carbon source | D-Glucose | D-Glucose (C) |
set31S33 | carbon source | D-Glucose | D-Glucose 5 mg/ml (C) |
set31S34 | carbon source | D-Glucose | D-Glucose 5 mg/ml (C) |
set31S71 | carbon source | D-Glucose | D-Glucose 2.5 mg/ml (C) |
set31S72 | carbon source | D-Glucose | D-Glucose 2.5 mg/ml (C) |
set4IT047 | carbon source | D-Glucose | D-Glucose (C) |
set4IT048 | carbon source | D-Glucose | D-Glucose (C) |
set4IT049 | carbon source | D-Glucose | D-Glucose (C) |
set4IT050 | carbon source | D-Glucose | D-Glucose (C) |
set4IT053 | carbon source | D-Glucose; L-Arginine | D-Glucose (C) with L-Arginine |
set4IT055 | carbon source | D-Glucose; L-Threonine | D-Glucose (C) with L-Threonine |
set4IT056 | carbon source | D-Glucose; 20AA_mix | D-Glucose (C) with 20 amino mix |
set4IT057 | carbon source | D-Glucose; 20AA_mix | D-Glucose (C) with 20 amino mix |
set11IT062 | carbon source | D-Leucrose | D-Leucrose (C) |
set11IT077 | carbon source | D-Leucrose | D-Leucrose (C) |
set1IT080 | carbon source | D-Maltose monohydrate | D-Maltose (C) |
set2IT009 | carbon source | D-Maltose monohydrate | D-Maltose (C) |
set1IT084 | carbon source | D-Mannose | D-Mannose (C) |
set2IT012 | carbon source | D-Mannose | D-Mannose (C) |
set31S74 | carbon source | D-Mannose | D-Mannose 2.5 mg/ml (C) |
set1IT075 | carbon source | D-Raffinose pentahydrate | D-Raffinose (C) |
set2IT005 | carbon source | D-Raffinose pentahydrate | D-Raffinose (C) |
set2IT020 | carbon source | D-Ribose | D-Ribose (C) |
set16IT041 | carbon source | D-Trehalose dihydrate | D-Trehalose 20mM (C) |
set16IT047 | carbon source | D-Trehalose dihydrate | D-Trehalose 20mM (C) |
set1IT077 | carbon source | D-Trehalose dihydrate | D-Trehalose (C) |
set2IT006 | carbon source | D-Trehalose dihydrate | D-Trehalose (C) |
set1IT086 | carbon source | D-Xylose | D-Xylose (C) |
set2IT014 | carbon source | D-Xylose | D-Xylose (C) |
set31S75 | carbon source | D-Xylose | D-Xylose 2.5 mg/ml (C) |
set31S76 | carbon source | D-Xylose | D-Xylose 2.5 mg/ml (C) |
set3IT009 | carbon source | dextran, Mw ~200,000 | dextran, Mw ~200,000 (C) |
set3IT025 | carbon source | dextran, Mw ~200,000 | dextran, Mw ~200,000 (C) |
set31S53 | carbon source | dextran, Mw ~200,000; autoclaved | dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C) |
set31S54 | carbon source | dextran, Mw ~200,000; autoclaved | dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C) |
set31S55 | carbon source | dextran, Mw ~200,000; filtered | dextran, Mw ~200,000; filtered 2.5 mg/ml (C) |
set31S56 | carbon source | dextran, Mw ~200,000; filtered | dextran, Mw ~200,000; filtered 2.5 mg/ml (C) |
set31S21 | carbon source | Dextrin from potato starch | Dextrin from potato starch; autoclaved 2.5 mg/ml (C) |
set31S22 | carbon source | Dextrin from potato starch | Dextrin from potato starch; autoclaved 2.5 mg/ml (C) |
set11IT065 | carbon source | Fructooligosaccharides (FOS) | Fructooligosaccharides (FOS) (C) |
set11IT080 | carbon source | Fructooligosaccharides (FOS) | Fructooligosaccharides (FOS) (C) |
set31S35 | carbon source | Galactan from Potato | Galactan from Potato; autoclaved 2.5 mg/ml (C) |
set31S36 | carbon source | Galactan from Potato | Galactan from Potato; autoclaved 2.5 mg/ml (C) |
set31S37 | carbon source | Galactan from Potato | Galactan from Potato; filtered 2.5 mg/ml (C) |
set31S38 | carbon source | Galactan from Potato | Galactan from Potato; filtered 2.5 mg/ml (C) |
set31S39 | carbon source | Glycogen | Glycogen; autoclaved 2.5 mg/ml (C) |
set31S40 | carbon source | Glycogen | Glycogen; autoclaved 2.5 mg/ml (C) |
set31S41 | carbon source | Glycogen | Glycogen; filtered 2.5 mg/ml (C) |
set31S42 | carbon source | Glycogen | Glycogen; filtered 2.5 mg/ml (C) |
set4IT038 | carbon source | Heparin sodium salt from porcine intestinal mucosa | Heparin from porcine intestinal mucosa (C) |
set4IT039 | carbon source | Heparin sodium salt from porcine intestinal mucosa | Heparin from porcine intestinal mucosa (C) |
set3IT014 | carbon source | Hyaluronic acid sodium salt from Streptococcus equi | Hyaluronic from Streptococcus equi (C) |
set3IT030 | carbon source | Hyaluronic acid sodium salt from Streptococcus equi | Hyaluronic from Streptococcus equi (C) |
set3IT040 | carbon source | Hyaluronic acid sodium salt from Streptococcus equi | Hyaluronic from Streptococcus equi |
set3IT050 | carbon source | Hyaluronic acid sodium salt from Streptococcus equi | Hyaluronic from Streptococcus equi |
set11IT053 | carbon source | Isomaltose | Isomaltose (C) |
set1IT091 | carbon source | L-Arabinose | L-Arabinose (C) |
set2IT018 | carbon source | L-Arabinose | L-Arabinose (C) |
set1IT076 | carbon source | L-Fucose | L-Fucose (C) |
set1IT094 | carbon source | L-Fucose | L-Fucose (C) |
set1IT081 | carbon source | L-Rhamnose monohydrate | L-Rhamnose (C) |
set2IT010 | carbon source | L-Rhamnose monohydrate | L-Rhamnose (C) |
set16IT039 | carbon source | Lactulose | Lactulose 20mM (C) |
set16IT045 | carbon source | Lactulose | Lactulose 20mM (C) |
set11IT058 | carbon source | Laminaribiose | Laminaribiose (C) |
set11IT073 | carbon source | Laminaribiose | Laminaribiose (C) |
set31S63 | carbon source | Levan - from Erwinia herbicola | Levan - from Erwinia herbicola; autoclaved 2.5 mg/ml (C) |
set31S64 | carbon source | Levan - from Erwinia herbicola | Levan - from Erwinia herbicola; autoclaved 2.5 mg/ml (C) |
set3IT015 | carbon source | Levan - from Erwinia herbicola | Levan - from Erwinia herbicola (C) |
set3IT031 | carbon source | Levan - from Erwinia herbicola | Levan - from Erwinia herbicola (C) |
set3IT051 | carbon source | Levan - from Erwinia herbicola | Levan - from Erwinia herbicola |
set16IT040 | carbon source | Maltitol | Maltitol 20mM (C) |
set16IT046 | carbon source | Maltitol | Maltitol 20mM (C) |
set11IT056 | carbon source | Maltohexaose | Maltohexaose (C) |
set11IT071 | carbon source | Maltohexaose | Maltohexaose (C) |
set11IT055 | carbon source | Maltotetraose | Maltotetraose (C) |
set11IT070 | carbon source | Maltotetraose | Maltotetraose (C) |
set31S57 | carbon source | Mannan from Saccharomyces cerevisiae | Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) |
set31S58 | carbon source | Mannan from Saccharomyces cerevisiae | Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) |
set32S107 | carbon source | Mannan from Saccharomyces cerevisiae | Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) |
set32S108 | carbon source | Mannan from Saccharomyces cerevisiae | Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) |
set3IT012 | carbon source | Mannan from Saccharomyces cerevisiae | Mannan from Saccharomyces cerevisiae (C) |
set3IT028 | carbon source | Mannan from Saccharomyces cerevisiae | Mannan from Saccharomyces cerevisiae (C) |
set11IT067 | carbon source | Melibiose | Melibiose (C) |
set11IT082 | carbon source | Melibiose | Melibiose (C) |
set27S309 | carbon source | Mucin from porcine stomach type III | carbon source Mucin from porcine stomach type III 10 mg/ml |
set27S310 | carbon source | Mucin from porcine stomach type III | carbon source Mucin from porcine stomach type III 10 mg/ml |
set27S311 | carbon source | Mucin from porcine stomach type III | carbon source Mucin from porcine stomach type III 10 mg/ml |
set27S312 | carbon source | Mucin from porcine stomach type III | carbon source Mucin from porcine stomach type III 10 mg/ml |
set31S93 | carbon source | Mucin from porcine stomach type III | Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) |
set31S94 | carbon source | Mucin from porcine stomach type III | Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) |
set1IT089 | carbon source | N-Acetyl-D-Glucosamine | NAG (C) |
set26IT066 | carbon source | N-Acetyl-D-Glucosamine | NAG (C) |
set26IT067 | carbon source | N-Acetyl-D-Glucosamine | NAG (C) |
set2IT016 | carbon source | N-Acetyl-D-Glucosamine | NAG (C) |
set31S77 | carbon source | N-Acetyl-D-Glucosamine | NAG 2.5 mg/ml (C) |
set31S78 | carbon source | N-Acetyl-D-Glucosamine | NAG 2.5 mg/ml (C) |
set27S329 | carbon source | Oat flour B-glucan | carbon source Oat flour B-glucan 10 mg/ml |
set11IT066 | carbon source | palatinose hydrate | palatinose (C) |
set11IT081 | carbon source | palatinose hydrate | palatinose (C) |
set31S10 | carbon source | Pectic galactan from potato | Pectic galactan from potato; autoclaved 2.5 mg/ml (C) |
set31S11 | carbon source | Pectic galactan from potato | Pectic galactan from potato; filtered 2.5 mg/ml (C) |
set31S12 | carbon source | Pectic galactan from potato | Pectic galactan from potato; filtered 2.5 mg/ml (C) |
set31S9 | carbon source | Pectic galactan from potato | Pectic galactan from potato; autoclaved 2.5 mg/ml (C) |
set3IT018 | carbon source | Pectin | Pectin (C) |
set3IT034 | carbon source | Pectin | Pectin (C) |
set3IT044 | carbon source | Pectin | Pectin |
set31S17 | carbon source | Pectin from apple | Pectin from apple; autoclaved 2.5 mg/ml (C) |
set31S18 | carbon source | Pectin from apple | Pectin from apple; autoclaved 2.5 mg/ml (C) |
set31S95 | carbon source | Pectin from apple | Pectin from apple; filtered 1 mg/ml (C) |
set31S96 | carbon source | Pectin from apple | Pectin from apple; filtered 1 mg/ml (C) |
set32S113 | carbon source | Pectin from citrus peel | Pectin from citrus peel; autoclaved 2.5 mg/ml (C) |
set32S114 | carbon source | Pectin from citrus peel | Pectin from citrus peel; autoclaved 2.5 mg/ml (C) |
set31S13 | carbon source | polygalacturonic acid | polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) |
set31S14 | carbon source | polygalacturonic acid | polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) |
set31S15 | carbon source | polygalacturonic acid | polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) |
set31S16 | carbon source | polygalacturonic acid | polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) |
set32S111 | carbon source | polygalacturonic acid | polygalacturonic; autoclaved 2.5 mg/ml (C) |
set32S112 | carbon source | polygalacturonic acid | polygalacturonic; autoclaved 2.5 mg/ml (C) |
set3IT017 | carbon source | polygalacturonic acid | polygalacturonic (C) |
set3IT043 | carbon source | polygalacturonic acid | polygalacturonic |
set31S27 | carbon source | Pullulan | Pullulan; autoclaved 2.5 mg/ml (C) |
set31S28 | carbon source | Pullulan | Pullulan; autoclaved 2.5 mg/ml (C) |
set31S29 | carbon source | Red Arabinan from sugar-beet | Red Arabinan from sugar-beet; filtered 5 mg/ml (C) |
set31S30 | carbon source | Red Arabinan from sugar-beet | Red Arabinan from sugar-beet; filtered 5 mg/ml (C) |
set31S31 | carbon source | Red Arabinan from sugar-beet | Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) |
set31S32 | carbon source | Red Arabinan from sugar-beet | Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) |
set32S101 | carbon source | Red Arabinan from sugar-beet | Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) |
set32S102 | carbon source | Red Arabinan from sugar-beet | Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) |
set3IT019 | carbon source | Red Arabinan from sugar-beet | Red Arabinan from sugar-beet (C) |
set3IT035 | carbon source | Red Arabinan from sugar-beet | Red Arabinan from sugar-beet (C) |
set3IT045 | carbon source | Red Arabinan from sugar-beet | Red Arabinan from sugar-beet |
set11IT061 | carbon source | Rhamnogalacturonan - from potato | Rhamnogalacturonan - from potato (C) |
set11IT076 | carbon source | Rhamnogalacturonan - from potato | Rhamnogalacturonan - from potato (C) |
set32S109 | carbon source | Rhamnogalacturonan - from potato | Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) |
set32S110 | carbon source | Rhamnogalacturonan - from potato | Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) |
set27S293 | carbon source | Rhamnogalacturonan-II from apple juice concentrate | carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml |
set27S294 | carbon source | Rhamnogalacturonan-II from apple juice concentrate | carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml |
set27S295 | carbon source | Rhamnogalacturonan-II from apple juice concentrate | carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml |
set27S296 | carbon source | Rhamnogalacturonan-II from apple juice concentrate | carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml |
set27S305 | carbon source | Rhamnogalacturonan-II from apple juice concentrate | carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml |
set27S307 | carbon source | Rhamnogalacturonan-II from apple juice concentrate | carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml |
set27S308 | carbon source | Rhamnogalacturonan-II from apple juice concentrate | carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml |
set11IT063 | carbon source | Stachyose - 70% | Stachyose - 70% (C) |
set11IT078 | carbon source | Stachyose - 70% | Stachyose - 70% (C) |
set31S59 | carbon source | Starch | Starch soluble; autoclaved 2.5 mg/ml (C) |
set31S60 | carbon source | Starch | Starch soluble; autoclaved 2.5 mg/ml (C) |
set3IT056 | carbon source | Starch | Starch from potato |
set4IT044 | carbon source | Starch | Starch from potato (C) |
set4IT045 | carbon source | Starch | Starch from potato (C) |
set16IT043 | carbon source | Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) | Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C) |
set16IT049 | carbon source | Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) | Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C) |
set31S25 | carbon source | Xylan from corn core | Xylan from corn core; autoclaved 2.5 mg/ml (C) |
set31S26 | carbon source | Xylan from corn core | Xylan from corn core; autoclaved 2.5 mg/ml (C) |
Or see all specific phenotypes in carbon source experiments for Bacteroides thetaiotaomicron VPI-5482