| Organism | Name | Group | Condition | Description |
| Bifidobacterium breve UCC2003 | set19S5 | mouse coculture | diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 | cage2; mouse2; day2; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S17 | mouse coculture | diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 | cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S1 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse1; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S13 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S25 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S37 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S2 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S14 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S26 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S38 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S3 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse3; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S15 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S27 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |
| Bifidobacterium breve UCC2003 | set19S39 | mouse coculture | diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 | cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 |