Experiment setAIT093 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -7.0 -4.8 Probable transmembrane protein compare
Pf6N2E2_4826 -6.5 -4.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_71 -6.4 -4.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_64 -6.3 -4.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3253 -6.3 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3842 -6.1 -4.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4825 -6.0 -7.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4597 -5.8 -8.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3783 -5.7 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4596 -5.6 -9.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_77 -5.5 -5.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2258 -5.4 -10.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5150 -5.2 -5.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4279 -5.1 -13.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4278 -5.0 -12.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5176 -5.0 -9.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_4047 -5.0 -5.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5175 -4.9 -13.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3826 -4.8 -6.6 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3752 -4.8 -22.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3751 -4.8 -14.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3839 -4.8 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4564 -4.7 -11.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4048 -4.7 -8.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3841 -4.6 -5.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2885 -4.6 -7.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3782 -4.5 -4.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5177 -4.5 -11.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3630 -4.4 -7.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3825 -4.4 -6.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3072 -4.3 -12.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_5006 -4.2 -11.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3252 -4.2 -10.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2073 -4.1 -7.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2074 -4.0 -2.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4277 -3.9 -11.4 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_66 -3.9 -9.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3610 -3.8 -4.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4759 -3.8 -17.9 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3940 -3.7 -11.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4049 -3.7 -10.9 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2897 -3.7 -12.8 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_2863 -3.6 -9.5 Gluconate permease compare
Pf6N2E2_50 -3.5 -8.8 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_5001 -3.2 -3.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_302 -3.2 -5.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2899 -3.2 -6.6 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_5223 -3.1 -6.6 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_3932 -3.1 -4.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5962 -2.9 -10.2 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_2375 -2.9 -4.1 Response regulator NasT compare
Pf6N2E2_5156 -2.9 -2.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2422 -2.9 -12.2 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_2423 -2.9 -6.5 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_4372 -2.9 -6.5 FIG00460773: hypothetical protein compare
Pf6N2E2_1056 -2.8 -1.8 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4761 -2.8 -12.1 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4803 -2.7 -2.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5579 -2.7 -6.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_63 -2.6 -4.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3251 -2.5 -12.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3170 -2.5 -6.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2864 -2.5 -3.2 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_4763 -2.4 -10.1 Biotin synthesis protein BioC compare
Pf6N2E2_5494 -2.4 -6.8 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_3461 -2.4 -2.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5527 -2.4 -3.4 Cold shock protein CspC compare
Pf6N2E2_3984 -2.4 -11.8 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_658 -2.3 -10.0 sensor histidine kinase compare
Pf6N2E2_2465 -2.3 -6.6 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4353 -2.3 -4.9 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4797 -2.3 -3.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5666 -2.2 -9.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5394 -2.2 -3.9 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_4276 -2.2 -6.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4611 -2.2 -5.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1186 -2.2 -5.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2424 -2.2 -5.4 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_4206 -2.2 -2.2 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2380 -2.1 -12.8 Nitrate reductase (EC 1.7.99.4) (from data) conserved
Pf6N2E2_2217 -2.1 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4624 -2.1 -1.7 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4009 -2.1 -10.4 GGDEF domain protein compare
Pf6N2E2_2378 -2.1 -11.6 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
Pf6N2E2_2890 -2.1 -9.1 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_2892 -2.0 -9.9 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_2895 -1.9 -7.9 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_4631 -1.9 -7.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_4764 -1.9 -6.2 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_5392 -1.9 -2.4 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_2891 -1.9 -10.8 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_3938 -1.9 -12.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3869 -1.9 -10.0 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_4638 -1.8 -3.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5258 -1.8 -8.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_5299 -1.8 -8.0 Benzoate transport protein compare
Pf6N2E2_2889 -1.8 -9.8 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_2376 -1.8 -10.3 nitrate transporter (from data) conserved
Pf6N2E2_4678 -1.8 -1.6 hypothetical protein compare
Pf6N2E2_2218 -1.7 -4.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4762 -1.7 -1.8 Biotin synthesis protein BioH compare
Pf6N2E2_5728 -1.7 -3.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2574 -1.7 -1.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_3349 -1.7 -2.1 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2896 -1.7 -4.9 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_5014 -1.6 -1.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5667 -1.6 -6.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4205 -1.6 -3.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2893 -1.6 -6.9 hypothetical protein compare
Pf6N2E2_2374 -1.5 -3.7 Nitrate ABC transporter, nitrate-binding protein conserved
Pf6N2E2_2473 -1.5 -1.5 Major outer membrane lipoprotein I compare
Pf6N2E2_613 -1.4 -2.0 lipoprotein, putative compare
Pf6N2E2_1187 -1.4 -6.5 Probable nikkomycin biosynthesis protein, carboxylase compare
Pf6N2E2_4454 -1.4 -5.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3941 -1.4 -3.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5242 -1.4 -2.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3198 -1.3 -2.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5339 -1.3 -5.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4351 -1.3 -7.1 Predicted signal transduction protein compare
Pf6N2E2_6065 -1.3 -2.0 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_2513 -1.3 -3.7 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5257 -1.3 -6.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_4181 -1.3 -1.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_2707 -1.3 -3.6 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_469 -1.3 -2.1 lipoprotein, putative compare
Pf6N2E2_1115 -1.3 -4.1 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf6N2E2_5190 -1.3 -8.2 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_3340 -1.3 -8.0 Fructose repressor FruR, LacI family compare
Pf6N2E2_5520 -1.2 -5.4 Sensory box histidine kinase compare
Pf6N2E2_3554 -1.2 -5.6 GCN5-related N-acetyltransferase compare
Pf6N2E2_5337 -1.2 -4.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2527 -1.2 -4.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5841 -1.2 -1.3 GlcG protein compare
Pf6N2E2_2286 -1.2 -3.2 FIG00953287: hypothetical protein compare
Pf6N2E2_4146 -1.2 -1.8 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_2675 -1.1 -1.3 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2013 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_3134 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_1870 -1.1 -3.0 hypothetical protein compare
Pf6N2E2_37 -1.1 -3.3 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2281 -1.1 -2.3 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_595 -1.1 -2.6 Arsenical resistance operon repressor compare
Pf6N2E2_2310 -1.1 -6.4 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2519 -1.1 -1.6 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_4416 -1.1 -1.9 Tyrosine recombinase XerC compare
Pf6N2E2_3786 -1.1 -2.5 Twin-arginine translocation protein TatC compare
Pf6N2E2_2274 -1.1 -3.7 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3807 -1.1 -3.9 Histidine utilization repressor compare
Pf6N2E2_4618 -1.1 -4.0 Chemotaxis signal transduction protein compare
Pf6N2E2_3384 -1.1 -4.1 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_4534 -1.1 -2.9 hypothetical protein compare
Pf6N2E2_2674 -1.0 -1.4 FIG00953856: hypothetical protein compare
Pf6N2E2_51 -1.0 -3.8 hypothetical protein compare
Pf6N2E2_4352 -1.0 -2.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4417 -1.0 -2.8 Protein of unknown function DUF484 compare
Pf6N2E2_1114 -1.0 -6.1 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) conserved
Pf6N2E2_5331 -1.0 -5.0 ATPase, AFG1 family compare
Pf6N2E2_605 -1.0 -3.2 FIG002465: BNR repeat protein compare
Pf6N2E2_5338 -1.0 -6.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_288 -1.0 -1.6 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3763 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_2510 -1.0 -3.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4187 -1.0 -2.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5906 -1.0 -1.9 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_3908 -1.0 -4.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4732 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_5679 -1.0 -4.1 hypothetical protein compare
Pf6N2E2_3460 -1.0 -1.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3641 -0.9 -2.9 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_4364 -0.9 -2.2 Protein YicC compare
Pf6N2E2_1189 -0.9 -3.3 Thioredoxin reductase (EC 1.8.1.9) compare
Pf6N2E2_5714 -0.9 -2.4 Flavoprotein WrbA compare
Pf6N2E2_2835 -0.9 -2.6 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_4733 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_5740 -0.9 -3.2 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_5316 -0.9 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2869 -0.9 -1.5 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_156 -0.9 -1.4 Carbon storage regulator compare
Pf6N2E2_4153 -0.9 -1.2 Sensory box histidine kinase compare
Pf6N2E2_3770 -0.9 -2.1 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3021 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_2311 -0.9 -5.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5524 -0.9 -6.3 Outer membrane porin, OprD family compare
Pf6N2E2_2340 -0.9 -2.1 Transcriptional regulator, GntR family compare
Pf6N2E2_1932 -0.9 -3.6 Transcriptional regulator, IclR family compare
Pf6N2E2_3933 -0.9 -4.9 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_2065 -0.9 -2.9 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_3282 -0.9 -1.6 FIG005080: Possible exported protein compare
Pf6N2E2_5772 -0.9 -3.2 DUF1232 domain-containing protein compare
Pf6N2E2_70 -0.9 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4476 -0.8 -4.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_3024 -0.8 -1.9 Phage tail fibers compare
Pf6N2E2_2795 -0.8 -1.9 putative exported protein compare
Pf6N2E2_5676 -0.8 -2.0 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5536 -0.8 -1.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_827 -0.8 -2.0 probable dioxygenase compare
Pf6N2E2_5103 -0.8 -0.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2508 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_5613 -0.8 -2.2 FIG00953674: hypothetical protein compare
Pf6N2E2_309 -0.8 -1.1 FIG00957702: hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Sodium nitrate across organisms