Experiment setAIT092 for Pseudomonas fluorescens FW300-N2E2

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Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -6.9 -4.8 Probable transmembrane protein compare
Pf6N2E2_3783 -6.6 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4597 -6.4 -6.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2258 -6.0 -5.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3630 -5.9 -5.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4825 -5.7 -7.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3253 -5.5 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4596 -5.4 -10.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5177 -5.3 -10.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4826 -5.3 -7.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4279 -5.3 -12.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_64 -5.2 -5.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3751 -5.1 -12.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3839 -5.1 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4047 -5.1 -4.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_71 -5.0 -6.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5150 -5.0 -5.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3842 -4.9 -5.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5006 -4.9 -9.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5176 -4.8 -8.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3610 -4.8 -6.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2073 -4.7 -5.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4564 -4.7 -11.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2885 -4.7 -6.3 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3252 -4.6 -9.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4278 -4.6 -13.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_50 -4.5 -10.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3782 -4.4 -4.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_77 -4.4 -5.9 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4762 -4.4 -5.0 Biotin synthesis protein BioH compare
Pf6N2E2_3461 -4.4 -3.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3752 -4.4 -21.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2897 -4.3 -11.9 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_5014 -4.3 -2.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5175 -4.2 -15.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3940 -4.2 -12.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2892 -4.2 -14.6 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_3251 -4.1 -12.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4048 -4.0 -7.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4759 -3.9 -16.1 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3841 -3.8 -6.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4049 -3.7 -10.2 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2893 -3.6 -9.4 hypothetical protein compare
Pf6N2E2_5527 -3.6 -3.4 Cold shock protein CspC compare
Pf6N2E2_4277 -3.6 -10.7 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2863 -3.6 -9.3 Gluconate permease compare
Pf6N2E2_2889 -3.5 -13.4 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_302 -3.5 -6.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_66 -3.5 -9.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2891 -3.4 -12.8 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_2890 -3.3 -10.5 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_4797 -3.3 -2.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3932 -3.3 -4.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4761 -3.2 -13.7 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2074 -3.2 -2.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5899 -3.2 -9.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4803 -3.2 -3.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2899 -3.1 -4.8 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4764 -3.0 -6.1 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_5001 -3.0 -3.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2465 -2.8 -7.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5156 -2.8 -2.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1056 -2.8 -1.7 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4763 -2.8 -10.8 Biotin synthesis protein BioC compare
Pf6N2E2_3170 -2.7 -7.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5579 -2.7 -7.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2895 -2.7 -7.9 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_4611 -2.7 -5.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5894 -2.7 -10.0 Putative threonine efflux protein compare
Pf6N2E2_4372 -2.6 -6.4 FIG00460773: hypothetical protein compare
Pf6N2E2_5666 -2.5 -9.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4631 -2.5 -9.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_63 -2.5 -3.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5299 -2.4 -10.4 Benzoate transport protein compare
Pf6N2E2_2896 -2.4 -3.6 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_3984 -2.3 -11.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5728 -2.2 -3.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4638 -2.2 -3.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5338 -2.1 -9.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4276 -2.1 -6.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5190 -2.0 -10.9 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_4009 -2.0 -10.2 GGDEF domain protein compare
Pf6N2E2_3340 -2.0 -11.3 Fructose repressor FruR, LacI family compare
Pf6N2E2_1718 -2.0 -4.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_1717 -1.9 -8.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_5679 -1.9 -3.7 hypothetical protein compare
Pf6N2E2_658 -1.9 -9.0 sensor histidine kinase compare
Pf6N2E2_2527 -1.8 -5.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5258 -1.8 -7.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_5316 -1.8 -2.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2218 -1.7 -4.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5667 -1.7 -6.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5337 -1.7 -5.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_613 -1.7 -2.1 lipoprotein, putative compare
Pf6N2E2_3869 -1.7 -8.2 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_5943 -1.7 -2.7 hypothetical protein compare
Pf6N2E2_2311 -1.7 -7.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_51 -1.6 -5.9 hypothetical protein compare
Pf6N2E2_3826 -1.6 -4.3 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4187 -1.6 -4.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5676 -1.6 -3.4 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3661 -1.6 -5.6 hypothetical protein compare
Pf6N2E2_2310 -1.6 -9.4 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2864 -1.6 -2.0 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_5494 -1.6 -5.0 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_4153 -1.5 -1.5 Sensory box histidine kinase compare
Pf6N2E2_2217 -1.5 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4476 -1.5 -6.0 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_3534 -1.5 -2.2 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_4159 -1.5 -3.4 Cytochrome c4 compare
Pf6N2E2_3460 -1.5 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3786 -1.5 -2.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_5257 -1.5 -7.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2186 -1.5 -5.7 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_3941 -1.4 -3.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5155 -1.4 -3.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_37 -1.4 -3.7 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2340 -1.4 -4.8 Transcriptional regulator, GntR family compare
Pf6N2E2_3938 -1.4 -10.0 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_2706 -1.4 -2.9 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_2274 -1.3 -5.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4678 -1.3 -1.3 hypothetical protein compare
Pf6N2E2_987 -1.3 -2.1 hypothetical protein compare
Pf6N2E2_5103 -1.3 -1.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5178 -1.2 -2.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2588 -1.2 -2.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_4743 -1.2 -0.9 hypothetical protein compare
Pf6N2E2_2124 -1.2 -2.1 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2586 -1.2 -1.8 Hpt domain protein compare
Pf6N2E2_5520 -1.2 -5.0 Sensory box histidine kinase compare
Pf6N2E2_2286 -1.2 -2.4 FIG00953287: hypothetical protein compare
Pf6N2E2_5740 -1.2 -3.9 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_2707 -1.2 -2.5 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2552 -1.2 -4.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5339 -1.2 -4.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2510 -1.2 -2.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4454 -1.1 -4.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_178 -1.1 -1.2 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5524 -1.1 -7.6 Outer membrane porin, OprD family compare
Pf6N2E2_2313 -1.1 -2.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_1424 -1.1 -1.7 transcriptional regulator, TetR family compare
Pf6N2E2_2320 -1.1 -2.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2425 -1.1 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2318 -1.1 -6.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2065 -1.1 -2.9 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_4071 -1.1 -3.3 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2061 -1.1 -4.1 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_2309 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_4416 -1.1 -2.0 Tyrosine recombinase XerC compare
Pf6N2E2_2869 -1.1 -1.2 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_4351 -1.1 -6.8 Predicted signal transduction protein compare
Pf6N2E2_5049 -1.0 -1.7 acetyltransferase, GNAT family compare
Pf6N2E2_238 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_1660 -1.0 -2.4 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_3027 -1.0 -1.5 Baseplate assembly protein V compare
Pf6N2E2_2487 -1.0 -1.0 FIG00956090: hypothetical protein compare
Pf6N2E2_2068 -1.0 -5.8 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_4205 -1.0 -3.3 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5571 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_55 -1.0 -2.1 Probable hydrolase compare
Pf6N2E2_4453 -1.0 -7.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_1320 -1.0 -3.5 Putative response regulator compare
Pf6N2E2_1870 -1.0 -2.5 hypothetical protein compare
Pf6N2E2_2277 -1.0 -1.8 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2646 -1.0 -1.4 FIG00953416: hypothetical protein compare
Pf6N2E2_3849 -0.9 -2.5 FIG00954739: hypothetical protein compare
Pf6N2E2_605 -0.9 -2.1 FIG002465: BNR repeat protein compare
Pf6N2E2_4601 -0.9 -0.9 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2753 -0.9 -1.4 HtrA protease/chaperone protein compare
Pf6N2E2_2428 -0.9 -2.7 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_3533 -0.9 -3.3 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_1932 -0.9 -3.5 Transcriptional regulator, IclR family compare
Pf6N2E2_2756 -0.9 -4.1 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4417 -0.9 -1.7 Protein of unknown function DUF484 compare
Pf6N2E2_3074 -0.9 -1.6 FIG00960973: hypothetical protein compare
Pf6N2E2_3505 -0.9 -1.6 Translation initiation factor SUI1-related protein compare
Pf6N2E2_6085 -0.9 -1.5 Aha1 domain superfamily compare
Pf6N2E2_3300 -0.9 -2.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_4658 -0.9 -3.9 FIG00955006: hypothetical protein compare
Pf6N2E2_5545 -0.9 -3.1 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_65 -0.9 -2.9 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf6N2E2_2253 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_2755 -0.9 -1.3 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3033 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_70 -0.8 -1.9 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2064 -0.8 -1.5 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3072 -0.8 -5.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_4706 -0.8 -2.0 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_5705 -0.8 -1.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3532 -0.8 -3.3 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_2444 -0.8 -3.0 Glutathione peroxidase family protein compare
Pf6N2E2_5742 -0.8 -3.6 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_1694 -0.8 -1.2 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5766 -0.8 -1.3 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_4486 -0.8 -3.6 Glycine cleavage system H protein compare
Pf6N2E2_5723 -0.8 -5.4 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_3698 -0.8 -2.7 Nicotinamidase family protein YcaC compare
Pf6N2E2_1165 -0.8 -2.9 hypothetical protein compare
Pf6N2E2_3868 -0.8 -4.8 Transcriptional regulator, LysR family compare
Pf6N2E2_3537 -0.8 -2.0 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Ammonium chloride in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Ammonium chloride across organisms