Experiment setAIT091 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Glucuronamide nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_77 -5.9 -4.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3783 -5.9 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_71 -5.6 -6.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3842 -5.4 -5.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3839 -5.1 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3253 -4.9 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4596 -4.8 -11.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4597 -4.7 -9.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4825 -4.6 -10.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3932 -4.6 -5.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4047 -4.4 -8.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3782 -4.4 -4.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5014 -4.4 -1.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3461 -4.3 -2.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3984 -4.1 -12.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4803 -4.1 -2.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3752 -4.1 -20.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4826 -4.1 -9.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_2073 -4.1 -9.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4418 -4.0 -1.3 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5160 -3.9 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3349 -3.8 -3.7 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3841 -3.8 -6.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3610 -3.8 -4.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5176 -3.7 -10.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5150 -3.7 -7.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3630 -3.6 -5.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3751 -3.6 -11.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2124 -3.5 -2.2 Mg(2+) transport ATPase protein C compare
Pf6N2E2_66 -3.5 -8.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_302 -3.4 -5.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3248 -3.4 -3.8 Probable transmembrane protein compare
Pf6N2E2_2885 -3.4 -9.5 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_4564 -3.2 -6.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5006 -3.2 -6.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4276 -3.1 -6.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5156 -3.1 -2.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_88 -3.0 -2.3 hypothetical protein compare
Pf6N2E2_5177 -3.0 -7.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_2258 -3.0 -8.5 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5175 -2.9 -12.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_1056 -2.9 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4048 -2.9 -5.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2277 -2.8 -3.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_4372 -2.7 -6.2 FIG00460773: hypothetical protein compare
Pf6N2E2_64 -2.7 -2.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_127 -2.6 -2.3 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_3940 -2.6 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4659 -2.5 -3.6 Lipoprotein, putative compare
Pf6N2E2_600 -2.4 -3.4 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3826 -2.4 -4.3 Nitrogen regulation protein NR(I) compare
Pf6N2E2_1288 -2.4 -2.3 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_1625 -2.3 -3.9 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3351 -2.2 -5.0 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_1876 -2.2 -3.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_4025 -2.2 -1.8 hypothetical protein compare
Pf6N2E2_5816 -2.2 -1.6 Smr domain protein compare
Pf6N2E2_3252 -2.2 -4.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3346 -2.1 -4.2 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_4009 -2.1 -7.4 GGDEF domain protein compare
Pf6N2E2_4277 -2.1 -7.1 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_5536 -2.0 -1.7 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2499 -2.0 -1.4 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_2646 -2.0 -1.4 FIG00953416: hypothetical protein compare
Pf6N2E2_2465 -2.0 -5.2 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5950 -2.0 -3.7 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4352 -2.0 -3.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4454 -2.0 -5.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3170 -1.9 -5.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3257 -1.9 -4.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4364 -1.9 -3.9 Protein YicC compare
Pf6N2E2_63 -1.9 -2.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2074 -1.9 -1.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4278 -1.9 -7.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_971 -1.8 -1.5 hypothetical protein compare
Pf6N2E2_4761 -1.8 -6.2 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_1148 -1.8 -2.4 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_828 -1.8 -3.3 Transcriptional regulator, TetR family compare
Pf6N2E2_1706 -1.8 -3.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_3641 -1.8 -3.1 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_5723 -1.8 -7.5 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_3171 -1.8 -1.4 hypothetical protein compare
Pf6N2E2_5579 -1.8 -4.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2312 -1.7 -1.8 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_4279 -1.7 -6.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4658 -1.7 -3.5 FIG00955006: hypothetical protein compare
Pf6N2E2_4305 -1.7 -1.0 FIG00959590: hypothetical protein compare
Pf6N2E2_1667 -1.7 -2.0 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_1188 -1.7 -3.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_1885 -1.7 -2.6 Transcriptional regulator, AraC family compare
Pf6N2E2_1381 -1.7 -5.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_5316 -1.6 -2.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_161 -1.6 -2.4 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_2375 -1.6 -2.3 Response regulator NasT compare
Pf6N2E2_5494 -1.6 -3.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2281 -1.6 -1.7 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_4638 -1.5 -3.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_341 -1.5 -2.8 sensor histidine kinase compare
Pf6N2E2_5155 -1.5 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5178 -1.5 -1.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5640 -1.5 -1.7 FIG00955597: hypothetical protein compare
Pf6N2E2_2274 -1.5 -3.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3607 -1.5 -4.6 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5553 -1.5 -4.2 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_464 -1.5 -2.6 Sensory histidine kinase QseC compare
Pf6N2E2_5190 -1.4 -6.4 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_28 -1.4 -2.0 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_3573 -1.4 -2.6 HupE-UreJ family metal transporter compare
Pf6N2E2_3875 -1.4 -1.4 FIG00953324: hypothetical protein compare
Pf6N2E2_5659 -1.4 -10.1 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
Pf6N2E2_2675 -1.4 -1.0 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3969 -1.4 -1.6 Membrane-fusion protein compare
Pf6N2E2_2267 -1.4 -2.6 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_1778 -1.3 -2.4 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_98 -1.3 -1.9 putative transmembrane protein compare
Pf6N2E2_2899 -1.3 -4.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_1776 -1.3 -1.6 Chemotaxis protein CheD compare
Pf6N2E2_2367 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_882 -1.3 -2.8 FIG00961517: hypothetical protein compare
Pf6N2E2_766 -1.3 -2.4 Fap protein with C39 domain compare
Pf6N2E2_3282 -1.3 -1.6 FIG005080: Possible exported protein compare
Pf6N2E2_5524 -1.3 -5.9 Outer membrane porin, OprD family compare
Pf6N2E2_3696 -1.3 -1.1 hypothetical protein compare
Pf6N2E2_3074 -1.3 -1.3 FIG00960973: hypothetical protein compare
Pf6N2E2_4759 -1.2 -7.0 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5785 -1.2 -2.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2753 -1.2 -1.8 HtrA protease/chaperone protein compare
Pf6N2E2_5869 -1.2 -2.1 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_1074 -1.2 -2.6 FIG00953356: hypothetical protein compare
Pf6N2E2_3825 -1.2 -2.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_405 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_4205 -1.2 -3.2 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_50 -1.2 -3.9 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3941 -1.2 -1.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_1502 -1.2 -1.6 Two-component system regulatory protein compare
Pf6N2E2_1989 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_3251 -1.2 -4.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_304 -1.2 -2.7 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_533 -1.1 -1.8 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_1652 -1.1 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_3271 -1.1 -1.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2253 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_1920 -1.1 -1.7 Rubredoxin compare
Pf6N2E2_3835 -1.1 -2.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2855 -1.1 -2.0 DGPFAETKE compare
Pf6N2E2_3539 -1.1 -1.1 FIG00955840: hypothetical protein compare
Pf6N2E2_4080 -1.1 -2.6 FIG00953722: hypothetical protein compare
Pf6N2E2_3561 -1.1 -1.5 Phosphate starvation-inducible protein psiF precursor compare
Pf6N2E2_2480 -1.1 -1.2 FIG00957636: hypothetical protein compare
Pf6N2E2_1886 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_4077 -1.1 -1.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4052 -1.1 -1.1 FIG00955481: hypothetical protein compare
Pf6N2E2_4342 -1.1 -2.1 Protein phosphatase ImpM compare
Pf6N2E2_522 -1.1 -2.5 Inositol transport system sugar-binding protein compare
Pf6N2E2_434 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_3161 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_3537 -1.1 -2.1 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_613 -1.1 -1.2 lipoprotein, putative compare
Pf6N2E2_3397 -1.1 -1.4 Phage protein compare
Pf6N2E2_1824 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_5991 -1.1 -1.4 proteinase inhibitor compare
Pf6N2E2_2986 -1.1 -2.0 Transcriptional regulator, LuxR family compare
Pf6N2E2_4764 -1.1 -2.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_1325 -1.1 -2.6 FIG00954773: hypothetical protein compare
Pf6N2E2_5527 -1.1 -1.5 Cold shock protein CspC compare
Pf6N2E2_4763 -1.1 -4.0 Biotin synthesis protein BioC compare
Pf6N2E2_6140 -1.1 -0.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2285 -1.0 -1.1 FIG00954079: hypothetical protein compare
Pf6N2E2_2424 -1.0 -1.7 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_2714 -1.0 -1.3 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_3738 -1.0 -2.1 General secretion pathway protein L compare
Pf6N2E2_4412 -1.0 -4.4 Ammonium transporter conserved
Pf6N2E2_1441 -1.0 -1.8 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_1336 -1.0 -2.6 AraC family transcription regulator compare
Pf6N2E2_4631 -1.0 -4.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_687 -1.0 -1.3 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_1545 -1.0 -2.6 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3201 -1.0 -2.2 Transcriptional regulator, MerR family compare
Pf6N2E2_544 -1.0 -1.8 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_3060 -1.0 -1.2 Outer membrane protein H precursor compare
Pf6N2E2_3942 -1.0 -4.5 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_229 -1.0 -1.9 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_3460 -1.0 -1.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_241 -1.0 -0.8 hypothetical protein compare
Pf6N2E2_2864 -1.0 -1.7 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_1443 -1.0 -2.3 putative aldo/keto reductase compare
Pf6N2E2_260 -1.0 -1.7 Regulator of cell morphogenesis and NO signaling compare
Pf6N2E2_718 -1.0 -2.5 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_3432 -1.0 -1.6 Ais protein, putative compare
Pf6N2E2_2861 -1.0 -3.5 hypothetical protein compare
Pf6N2E2_2518 -1.0 -1.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4678 -1.0 -0.8 hypothetical protein compare
Pf6N2E2_933 -1.0 -2.4 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2693 -1.0 -1.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_1399 -1.0 -3.0 Transcriptional regulator, LuxR family compare
Pf6N2E2_4499 -0.9 -1.9 protein of unknown function DUF86 compare
Pf6N2E2_2758 -0.9 -5.5 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_3563 -0.9 -3.2 FMN-dependent NADH-azoreductase compare
Pf6N2E2_5748 -0.9 -2.2 Transcriptional activator protein LuxR compare
Pf6N2E2_658 -0.9 -4.4 sensor histidine kinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in nitrogen source experiments

For nitrogen source Glucuronamide across organisms