Experiment setAIT088 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Uridine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3060 -6.6 -4.5 Outer membrane protein H precursor compare
Pf6N2E2_3783 -6.3 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3253 -5.9 -4.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4825 -5.9 -5.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3248 -5.8 -5.7 Probable transmembrane protein compare
Pf6N2E2_5006 -5.8 -5.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4597 -5.7 -7.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4596 -5.6 -6.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3826 -5.5 -3.8 Nitrogen regulation protein NR(I) compare
Pf6N2E2_71 -5.5 -5.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2258 -5.4 -8.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3751 -5.3 -10.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3630 -5.3 -6.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4826 -5.2 -7.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3842 -5.2 -5.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3841 -5.1 -3.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3940 -5.1 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5176 -5.1 -6.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5177 -4.9 -11.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_64 -4.9 -4.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4047 -4.9 -4.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3752 -4.7 -20.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2073 -4.7 -3.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3782 -4.7 -3.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4353 -4.6 -6.3 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4279 -4.6 -12.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5175 -4.6 -11.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4048 -4.5 -8.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_500 -4.5 -4.3 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_3839 -4.5 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2885 -4.5 -5.3 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_4564 -4.5 -11.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4071 -4.5 -5.3 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1188 -4.4 -5.9 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_77 -4.4 -5.2 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2574 -4.3 -2.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_4509 -4.3 -10.4 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
Pf6N2E2_3610 -4.2 -5.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_1186 -4.2 -5.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_1187 -4.2 -9.9 Probable nikkomycin biosynthesis protein, carboxylase compare
Pf6N2E2_3461 -4.1 -2.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5014 -4.1 -1.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3072 -4.1 -11.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_5527 -4.0 -2.8 Cold shock protein CspC compare
Pf6N2E2_5150 -4.0 -6.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4803 -3.9 -2.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_658 -3.9 -13.2 sensor histidine kinase compare
Pf6N2E2_5780 -3.9 -9.7 Periplasmic protease compare
Pf6N2E2_2074 -3.8 -2.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3554 -3.8 -10.5 GCN5-related N-acetyltransferase compare
Pf6N2E2_496 -3.8 -10.9 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) conserved
Pf6N2E2_4391 -3.7 -6.7 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_5160 -3.7 -2.5 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_66 -3.7 -8.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3252 -3.6 -8.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2117 -3.6 -15.6 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_3464 -3.6 -13.1 LysR family transcriptional regulator PA0133 conserved
Pf6N2E2_1189 -3.4 -7.1 Thioredoxin reductase (EC 1.8.1.9) compare
Pf6N2E2_3938 -3.4 -15.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_4153 -3.3 -2.2 Sensory box histidine kinase compare
Pf6N2E2_4372 -3.3 -5.5 FIG00460773: hypothetical protein compare
Pf6N2E2_2261 -3.3 -5.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_3932 -3.3 -4.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4278 -3.2 -12.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4187 -3.2 -3.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3258 -3.2 -4.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3463 -3.2 -11.1 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) conserved
Pf6N2E2_5679 -3.1 -4.1 hypothetical protein compare
Pf6N2E2_3257 -3.1 -4.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1190 -3.1 -7.0 Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase compare
Pf6N2E2_498 -3.0 -5.6 Dihydropyrimidinase (EC 3.5.2.2) (from data) conserved
Pf6N2E2_2218 -3.0 -4.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3825 -2.9 -5.4 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_4277 -2.9 -10.2 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_5156 -2.9 -2.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2899 -2.9 -6.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_3251 -2.9 -10.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4611 -2.8 -4.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3260 -2.8 -4.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_497 -2.8 -6.3 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism conserved
Pf6N2E2_5579 -2.7 -7.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4072 -2.7 -5.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_1056 -2.7 -1.7 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_63 -2.7 -4.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2465 -2.7 -7.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4276 -2.6 -6.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5494 -2.6 -6.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_302 -2.6 -5.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3835 -2.6 -4.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3198 -2.5 -2.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5337 -2.5 -5.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2588 -2.5 -4.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_4416 -2.4 -3.2 Tyrosine recombinase XerC compare
Pf6N2E2_1191 -2.4 -8.1 Thiaminase II (EC 3.5.99.2) compare
Pf6N2E2_3170 -2.4 -6.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4418 -2.4 -1.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4759 -2.4 -10.9 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_499 -2.3 -4.5 Possible pyrimidine permease in reductive pathway conserved
Pf6N2E2_5219 -2.3 -8.7 FIG140336: TPR domain protein compare
Pf6N2E2_2022 -2.3 -7.3 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_3607 -2.3 -7.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_50 -2.2 -7.3 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3460 -2.2 -2.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2527 -2.1 -5.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3349 -2.0 -3.1 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2586 -2.0 -2.3 Hpt domain protein compare
Pf6N2E2_3984 -2.0 -8.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5339 -2.0 -7.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5242 -1.9 -2.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4658 -1.9 -6.1 FIG00955006: hypothetical protein compare
Pf6N2E2_4453 -1.9 -13.0 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4077 -1.9 -2.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4638 -1.9 -2.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5001 -1.9 -1.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2746 -1.9 -5.8 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_4204 -1.9 -1.3 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5338 -1.9 -8.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5950 -1.8 -4.5 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_5720 -1.8 -11.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4009 -1.8 -8.1 GGDEF domain protein compare
Pf6N2E2_5316 -1.8 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5027 -1.7 -9.3 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_3096 -1.7 -1.5 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4541 -1.7 -1.7 hypothetical protein compare
Pf6N2E2_3885 -1.7 -2.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_5723 -1.7 -9.9 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_2519 -1.6 -1.8 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5258 -1.6 -6.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2473 -1.6 -1.4 Major outer membrane lipoprotein I compare
Pf6N2E2_5257 -1.6 -7.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2274 -1.6 -4.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2474 -1.6 -6.6 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2253 -1.6 -2.0 hypothetical protein compare
Pf6N2E2_4369 -1.6 -2.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5555 -1.6 -1.5 Cold shock protein CspA compare
Pf6N2E2_3534 -1.6 -2.7 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3834 -1.5 -4.2 Lipoprotein NlpD compare
Pf6N2E2_2675 -1.5 -1.4 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4159 -1.5 -3.8 Cytochrome c4 compare
Pf6N2E2_5049 -1.5 -2.4 acetyltransferase, GNAT family compare
Pf6N2E2_5155 -1.5 -3.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4074 -1.5 -7.6 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_6140 -1.4 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3521 -1.4 -6.2 Sensor histidine kinase/response regulator compare
Pf6N2E2_2217 -1.4 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5666 -1.4 -7.2 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2413 -1.3 -1.6 FIG074102: hypothetical protein compare
Pf6N2E2_4659 -1.3 -3.3 Lipoprotein, putative compare
Pf6N2E2_3183 -1.3 -2.9 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_3351 -1.3 -3.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_178 -1.3 -1.3 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3941 -1.3 -3.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4412 -1.3 -5.7 Ammonium transporter compare
Pf6N2E2_5554 -1.3 -3.8 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_4075 -1.3 -3.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3271 -1.3 -2.4 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2340 -1.3 -3.5 Transcriptional regulator, GntR family compare
Pf6N2E2_2065 -1.3 -3.4 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_5728 -1.3 -3.4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2897 -1.3 -6.7 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_292 -1.3 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_2106 -1.2 -1.5 hypothetical protein compare
Pf6N2E2_2864 -1.2 -2.0 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_3869 -1.2 -7.5 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_3264 -1.2 -2.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4025 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_2375 -1.2 -2.9 Response regulator NasT compare
Pf6N2E2_4818 -1.2 -3.6 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_4362 -1.2 -2.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_1699 -1.2 -2.2 FIG00955832: hypothetical protein compare
Pf6N2E2_3325 -1.2 -2.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_5820 -1.2 -2.7 FIG00957914: hypothetical protein compare
Pf6N2E2_3666 -1.1 -3.1 InaA protein compare
Pf6N2E2_2552 -1.1 -2.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4146 -1.1 -1.6 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_4761 -1.1 -5.8 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4817 -1.1 -8.6 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_4454 -1.1 -3.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1044 -1.1 -3.0 hypothetical protein compare
Pf6N2E2_3282 -1.1 -1.7 FIG005080: Possible exported protein compare
Pf6N2E2_5705 -1.1 -1.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_291 -1.1 -2.6 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_2120 -1.1 -6.5 Alpha-amylase (EC 3.2.1.1) compare
Pf6N2E2_5972 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_5300 -1.1 -6.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3786 -1.1 -2.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_1352 -1.1 -2.3 Cation transport ATPase compare
Pf6N2E2_2938 -1.1 -2.3 Outer membrane lipoprotein compare
Pf6N2E2_3875 -1.1 -1.5 FIG00953324: hypothetical protein compare
Pf6N2E2_1385 -1.0 -1.7 FIG00956261: hypothetical protein compare
Pf6N2E2_2674 -1.0 -1.3 FIG00953856: hypothetical protein compare
Pf6N2E2_2071 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_5342 -1.0 -2.0 21 kDa hemolysin precursor compare
Pf6N2E2_3661 -1.0 -3.2 hypothetical protein compare
Pf6N2E2_3833 -1.0 -3.1 hypothetical protein compare
Pf6N2E2_3696 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_4836 -1.0 -4.1 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Pf6N2E2_1987 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_2186 -1.0 -3.3 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_5103 -1.0 -1.2 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source Uridine in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Uridine across organisms