Experiment setAIT084 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Citrulline nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -6.9 -4.8 Probable transmembrane protein compare
Pf6N2E2_3783 -6.6 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_64 -6.2 -4.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4825 -6.1 -5.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3253 -5.9 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4826 -5.8 -6.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4597 -5.8 -8.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5006 -5.7 -7.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3630 -5.7 -6.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4596 -5.4 -9.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4047 -5.3 -3.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3751 -5.2 -13.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_71 -5.2 -7.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_77 -5.0 -6.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3842 -5.0 -5.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2885 -5.0 -4.8 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3782 -4.9 -3.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3252 -4.9 -8.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3841 -4.8 -5.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3610 -4.7 -6.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5175 -4.7 -12.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3752 -4.7 -22.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_50 -4.6 -9.8 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_5176 -4.6 -9.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_2073 -4.5 -6.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5177 -4.4 -11.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3932 -4.3 -6.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4048 -4.3 -8.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5014 -4.3 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3940 -4.2 -12.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4564 -4.1 -10.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5150 -4.1 -6.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2074 -4.0 -2.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3839 -4.0 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4418 -4.0 -1.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3251 -3.9 -13.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2258 -3.8 -13.1 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_4759 -3.8 -16.1 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_4276 -3.6 -6.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_3825 -3.6 -6.3 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_4277 -3.5 -11.4 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_4372 -3.4 -5.7 FIG00460773: hypothetical protein compare
Pf6N2E2_1187 -3.4 -11.0 Probable nikkomycin biosynthesis protein, carboxylase compare
Pf6N2E2_66 -3.4 -8.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4279 -3.3 -12.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5316 -3.3 -2.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_302 -3.2 -7.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3461 -3.1 -2.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4353 -3.1 -5.3 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5160 -3.0 -2.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3826 -3.0 -5.2 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4278 -2.8 -9.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5527 -2.8 -3.2 Cold shock protein CspC compare
Pf6N2E2_5156 -2.8 -2.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1189 -2.8 -6.7 Thioredoxin reductase (EC 1.8.1.9) compare
Pf6N2E2_63 -2.8 -4.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_658 -2.7 -11.7 sensor histidine kinase compare
Pf6N2E2_4803 -2.6 -2.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4658 -2.6 -6.5 FIG00955006: hypothetical protein compare
Pf6N2E2_3170 -2.6 -6.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4611 -2.4 -4.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2465 -2.4 -6.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4764 -2.3 -5.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4761 -2.3 -10.1 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2588 -2.3 -4.2 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_5669 -2.3 -6.8 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_2899 -2.2 -6.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_5728 -2.2 -4.4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4638 -2.2 -3.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3264 -2.2 -3.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4009 -2.2 -10.3 GGDEF domain protein compare
Pf6N2E2_5666 -2.1 -9.8 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3060 -2.0 -3.0 Outer membrane protein H precursor compare
Pf6N2E2_4187 -2.0 -4.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4204 -2.0 -1.3 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4987 -2.0 -1.8 MaoC-like domain protein compare
Pf6N2E2_4631 -1.9 -10.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_3984 -1.9 -9.7 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_1188 -1.9 -5.4 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_4417 -1.9 -4.9 Protein of unknown function DUF484 compare
Pf6N2E2_5258 -1.9 -6.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_1147 -1.9 -2.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_4763 -1.9 -8.5 Biotin synthesis protein BioC compare
Pf6N2E2_2186 -1.8 -5.2 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_5950 -1.8 -3.4 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4205 -1.8 -4.9 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_51 -1.8 -6.1 hypothetical protein compare
Pf6N2E2_4307 -1.7 -3.1 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_3349 -1.7 -2.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5155 -1.7 -3.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1186 -1.7 -6.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_1190 -1.7 -5.7 Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase compare
Pf6N2E2_6140 -1.7 -1.2 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5723 -1.7 -10.4 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_4762 -1.7 -1.9 Biotin synthesis protein BioH compare
Pf6N2E2_127 -1.7 -2.1 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_5103 -1.7 -1.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5676 -1.7 -3.2 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5261 -1.7 -1.3 FIG00956983: hypothetical protein compare
Pf6N2E2_156 -1.6 -1.8 Carbon storage regulator compare
Pf6N2E2_4077 -1.6 -2.0 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4454 -1.6 -5.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3198 -1.6 -2.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5338 -1.5 -7.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2574 -1.5 -1.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_3938 -1.5 -10.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_2022 -1.5 -5.3 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_2514 -1.5 -4.7 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2897 -1.5 -7.6 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_1870 -1.5 -1.4 hypothetical protein compare
Pf6N2E2_4399 -1.5 -5.9 GGDEF domain/EAL domain protein compare
Pf6N2E2_5339 -1.4 -6.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5190 -1.4 -8.0 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_5665 -1.4 -6.0 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_3607 -1.4 -6.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4412 -1.4 -8.2 Ammonium transporter compare
Pf6N2E2_2402 -1.4 -1.9 hypothetical protein compare
Pf6N2E2_5955 -1.4 -4.8 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_5494 -1.4 -3.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5679 -1.4 -4.0 hypothetical protein compare
Pf6N2E2_3875 -1.4 -1.7 FIG00953324: hypothetical protein compare
Pf6N2E2_5337 -1.3 -4.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2311 -1.3 -6.3 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2890 -1.3 -7.7 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_2895 -1.3 -6.7 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_5571 -1.3 -1.5 hypothetical protein compare
Pf6N2E2_5668 -1.3 -4.3 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_4969 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_4659 -1.3 -3.8 Lipoprotein, putative compare
Pf6N2E2_2527 -1.3 -4.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5536 -1.3 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2010 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_4360 -1.2 -7.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_5257 -1.2 -4.7 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_4624 -1.2 -1.0 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_3282 -1.2 -2.1 FIG005080: Possible exported protein compare
Pf6N2E2_2891 -1.2 -7.3 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_1545 -1.2 -3.5 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2413 -1.2 -2.0 FIG074102: hypothetical protein compare
Pf6N2E2_5219 -1.1 -4.9 FIG140336: TPR domain protein compare
Pf6N2E2_3460 -1.1 -1.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2309 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_70 -1.1 -2.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4612 -1.1 -3.0 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_4071 -1.1 -3.6 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3477 -1.1 -1.8 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2893 -1.1 -4.1 hypothetical protein compare
Pf6N2E2_1191 -1.1 -5.5 Thiaminase II (EC 3.5.99.2) compare
Pf6N2E2_2889 -1.1 -6.2 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_5242 -1.1 -1.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_1932 -1.1 -3.7 Transcriptional regulator, IclR family compare
Pf6N2E2_4206 -1.1 -1.5 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2892 -1.1 -6.8 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_2973 -1.1 -4.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5646 -1.1 -1.2 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_3941 -1.1 -2.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_1672 -1.0 -6.3 hypothetical protein compare
Pf6N2E2_4007 -1.0 -3.9 FIG00956018: hypothetical protein compare
Pf6N2E2_5720 -1.0 -7.0 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2586 -1.0 -1.3 Hpt domain protein compare
Pf6N2E2_2218 -1.0 -2.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_234 -1.0 -3.1 FIG00454312: hypothetical protein compare
Pf6N2E2_81 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_3554 -1.0 -4.7 GCN5-related N-acetyltransferase compare
Pf6N2E2_4678 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_1812 -1.0 -2.9 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_2756 -1.0 -4.5 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4570 -1.0 -2.5 Cation/multidrug efflux pump compare
Pf6N2E2_2274 -1.0 -2.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2896 -1.0 -3.0 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_2253 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_1081 -1.0 -1.5 probable membrane protein YPO3302 compare
Pf6N2E2_6090 -1.0 -2.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_3908 -1.0 -4.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_1424 -1.0 -1.2 transcriptional regulator, TetR family compare
Pf6N2E2_178 -1.0 -1.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2674 -1.0 -1.2 FIG00953856: hypothetical protein compare
Pf6N2E2_2313 -1.0 -2.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_1352 -0.9 -1.7 Cation transport ATPase compare
Pf6N2E2_2286 -0.9 -1.8 FIG00953287: hypothetical protein compare
Pf6N2E2_613 -0.9 -1.3 lipoprotein, putative compare
Pf6N2E2_4453 -0.9 -8.0 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5820 -0.9 -1.9 FIG00957914: hypothetical protein compare
Pf6N2E2_1287 -0.9 -1.9 Mobile element protein compare
Pf6N2E2_2852 -0.9 -5.7 GGDEF domain/EAL domain protein compare
Pf6N2E2_1987 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_5300 -0.9 -6.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_1797 -0.9 -1.7 Transcriptional regulator compare
Pf6N2E2_1652 -0.9 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_2753 -0.9 -2.1 HtrA protease/chaperone protein compare
Pf6N2E2_3770 -0.9 -1.7 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_2310 -0.9 -4.6 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_34 -0.9 -2.5 Cytosine deaminase (EC 3.5.4.1) compare
Pf6N2E2_3933 -0.9 -3.9 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_3677 -0.9 -6.7 Sensory box/GGDEF family protein compare
Pf6N2E2_4162 -0.9 -2.2 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2546 -0.9 -2.9 Carbon storage regulator compare
Pf6N2E2_2444 -0.9 -2.9 Glutathione peroxidase family protein compare
Pf6N2E2_2318 -0.8 -4.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5340 -0.8 -2.3 Stringent starvation protein A compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Citrulline in Pseudomonas fluorescens FW300-N2E2

For nitrogen source L-Citrulline across organisms