Experiment setAIT084 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Citrulline nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3037 +1.7 12.2 RNA polymerase sigma factor RpoS compare
Pf6N2E2_5664 +1.6 6.3 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_3661 +1.6 7.4 hypothetical protein compare
Pf6N2E2_4305 +1.4 2.4 FIG00959590: hypothetical protein compare
Pf6N2E2_2406 +1.4 8.6 Periplasmic binding protein compare
Pf6N2E2_4640 +1.3 1.4 hypothetical protein compare
Pf6N2E2_2175 +1.3 4.0 Transcriptional regulator, RpiR family compare
Pf6N2E2_2912 +1.2 1.0 FIG00954094: hypothetical protein compare
Pf6N2E2_2178 +1.1 6.4 FIG00960144: hypothetical protein compare
Pf6N2E2_5086 +1.1 1.7 hypothetical protein compare
Pf6N2E2_5704 +1.1 4.7 Transcriptional regulatory protein PhoP compare
Pf6N2E2_3978 +1.0 8.0 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_4054 +1.0 3.0 Osmotically inducible protein C compare
Pf6N2E2_5560 +1.0 3.6 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_3981 +1.0 8.8 T1SS secreted agglutinin RTX compare
Pf6N2E2_1099 +1.0 2.1 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_3979 +1.0 7.3 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_1714 +1.0 3.5 FIG01218476: hypothetical protein compare
Pf6N2E2_4160 +1.0 1.6 Cytochrome c5 compare
Pf6N2E2_3980 +1.0 6.4 Type I secretion system, outer membrane component LapE compare
Pf6N2E2_2106 +0.9 2.0 hypothetical protein compare
Pf6N2E2_2278 +0.9 8.0 Transcription-repair coupling factor compare
Pf6N2E2_4684 +0.9 3.6 hypothetical protein compare
Pf6N2E2_5207 +0.9 1.8 hypothetical protein compare
Pf6N2E2_1675 +0.9 5.8 Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16) compare
Pf6N2E2_3475 +0.9 2.1 hypothetical protein compare
Pf6N2E2_5663 +0.9 2.3 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_2582 +0.9 1.8 Flagellar motor switch protein FliN compare
Pf6N2E2_659 +0.9 2.2 Transcriptional regulatory protein ompR compare
Pf6N2E2_4414 +0.9 3.4 FIG00953808: hypothetical protein compare
Pf6N2E2_2984 +0.9 1.7 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_2962 +0.9 3.0 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_2177 +0.9 4.2 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf6N2E2_1034 +0.9 1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5073 +0.9 2.2 Large-conductance mechanosensitive channel compare
Pf6N2E2_3326 +0.8 1.9 hypothetical protein compare
Pf6N2E2_5794 +0.8 2.5 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3656 +0.8 4.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_1821 +0.8 1.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3820 +0.8 1.8 hypothetical protein compare
Pf6N2E2_3659 +0.8 4.1 Protein fixF compare
Pf6N2E2_3271 +0.8 2.1 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2350 +0.8 1.8 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_2597 +0.8 5.0 Flagellar regulatory protein FleQ compare
Pf6N2E2_5567 +0.8 2.3 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_906 +0.8 1.7 ISPpu14, transposase Orf2 compare
Pf6N2E2_5993 +0.8 1.4 FIG00957412: hypothetical protein compare
Pf6N2E2_4662 +0.8 2.1 hypothetical protein compare
Pf6N2E2_445 +0.8 3.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_241 +0.8 1.1 hypothetical protein compare
Pf6N2E2_4464 +0.7 1.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_2440 +0.7 1.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_309 +0.7 1.3 FIG00957702: hypothetical protein compare
Pf6N2E2_1677 +0.7 3.5 Chalcone synthase (EC 2.3.1.74) compare
Pf6N2E2_3792 +0.7 3.9 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3762 +0.7 3.5 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_2507 +0.7 3.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3663 +0.7 3.8 Glycosyl transferase compare
Pf6N2E2_5662 +0.7 3.8 L-Arginine ABC transporter, permease protein AotM (from data) compare
Pf6N2E2_4362 +0.7 2.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_6047 +0.7 0.9 hypothetical protein compare
Pf6N2E2_1774 +0.7 1.3 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_961 +0.7 1.3 FIG00954712: hypothetical protein compare
Pf6N2E2_546 +0.7 1.7 FIG00966904: hypothetical protein compare
Pf6N2E2_3791 +0.7 4.9 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1674 +0.7 3.0 Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) compare
Pf6N2E2_2755 +0.7 1.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2487 +0.7 0.9 FIG00956090: hypothetical protein compare
Pf6N2E2_1157 +0.7 2.6 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_2869 +0.7 1.3 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_5328 +0.7 2.5 FIG00958649: hypothetical protein compare
Pf6N2E2_3709 +0.7 3.5 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1720 +0.7 2.2 hypothetical protein compare
Pf6N2E2_1665 +0.7 2.1 hypothetical protein compare
Pf6N2E2_5496 +0.7 2.2 FIG00953991: hypothetical protein compare
Pf6N2E2_1028 +0.6 2.5 Transcriptional regulator, LysR family compare
Pf6N2E2_443 +0.6 2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3871 +0.6 4.7 FIG00553872: hypothetical protein compare
Pf6N2E2_1211 +0.6 1.4 Lactoylglutathione lyase compare
Pf6N2E2_3130 +0.6 2.2 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_1124 +0.6 1.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1997 +0.6 2.0 FIG00956406: hypothetical protein compare
Pf6N2E2_1176 +0.6 1.9 Mll2356 protein compare
Pf6N2E2_1761 +0.6 2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_3100 +0.6 2.0 FIG00953063: hypothetical protein compare
Pf6N2E2_4438 +0.6 1.6 hypothetical protein compare
Pf6N2E2_146 +0.6 1.6 Transcriptional regulator, MarR family compare
Pf6N2E2_4943 +0.6 1.3 PspA/IM30 family protein compare
Pf6N2E2_5573 +0.6 2.2 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_924 +0.6 1.1 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_3983 +0.6 4.0 Membrane bound c-di-GMP receptor LapD compare
Pf6N2E2_3338 +0.6 1.5 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_5262 +0.6 1.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_1886 +0.6 1.5 hypothetical protein compare
Pf6N2E2_3868 +0.6 3.4 Transcriptional regulator, LysR family compare
Pf6N2E2_2788 +0.6 1.7 Transcriptional regulator, AsnC family compare
Pf6N2E2_4537 +0.6 1.8 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_1032 +0.6 0.9 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_3466 +0.6 1.5 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_204 +0.6 1.4 hypothetical protein compare
Pf6N2E2_4706 +0.6 1.8 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_4052 +0.6 1.2 FIG00955481: hypothetical protein compare
Pf6N2E2_1213 +0.6 1.8 hypothetical protein compare
Pf6N2E2_1148 +0.6 2.2 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_2055 +0.6 2.2 StbE replicon stabilization toxin compare
Pf6N2E2_1839 +0.6 1.5 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_170 +0.6 1.3 lipoprotein, putative compare
Pf6N2E2_889 +0.6 2.6 Hydrolases of the alpha/beta superfamily compare
Pf6N2E2_1106 +0.6 2.5 Chromosome initiation inhibitor compare
Pf6N2E2_3625 +0.6 3.9 Flagellar motor rotation protein MotA compare
Pf6N2E2_4332 +0.6 1.9 hypothetical protein compare
Pf6N2E2_1889 +0.6 2.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_1818 +0.6 2.1 hypothetical protein compare
Pf6N2E2_827 +0.6 1.3 probable dioxygenase compare
Pf6N2E2_4070 +0.6 2.5 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_1798 +0.6 2.6 Argininosuccinate lyase (EC 4.3.2.1) compare
Pf6N2E2_3529 +0.6 1.1 Toxin A compare
Pf6N2E2_1012 +0.6 1.4 hypothetical protein compare
Pf6N2E2_5847 +0.6 2.2 Glycine betaine/L-proline ABC transporter, glycine betaine/L-proline- binding/permease protein compare
Pf6N2E2_2182 +0.6 2.2 hypothetical protein compare
Pf6N2E2_5660 +0.6 3.0 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) compare
Pf6N2E2_3122 +0.5 1.6 Chemotaxis signal transduction protein compare
Pf6N2E2_6022 +0.5 1.8 StbE replicon stabilization toxin compare
Pf6N2E2_3830 +0.5 2.3 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_848 +0.5 1.5 hypothetical protein compare
Pf6N2E2_1113 +0.5 1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3870 +0.5 1.6 hypothetical protein compare
Pf6N2E2_1009 +0.5 1.4 Inositol transport system permease protein compare
Pf6N2E2_5991 +0.5 1.5 proteinase inhibitor compare
Pf6N2E2_2624 +0.5 3.1 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_2967 +0.5 1.2 Cold shock protein CspA compare
Pf6N2E2_84 +0.5 1.3 hypothetical protein compare
Pf6N2E2_339 +0.5 1.4 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_1337 +0.5 2.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4729 +0.5 2.3 hypothetical protein compare
Pf6N2E2_6094 +0.5 2.9 Glucoamylase (EC 3.2.1.3) compare
Pf6N2E2_5768 +0.5 1.8 DNA recombination-dependent growth factor C compare
Pf6N2E2_5703 +0.5 1.8 outer membrane protein H1 compare
Pf6N2E2_2288 +0.5 2.3 FIG00953423: hypothetical protein compare
Pf6N2E2_5734 +0.5 3.0 NLP/P60 family protein compare
Pf6N2E2_5499 +0.5 0.7 hypothetical protein compare
Pf6N2E2_43 +0.5 2.7 Histidine permease YuiF compare
Pf6N2E2_2417 +0.5 1.8 Sensor histidine kinase compare
Pf6N2E2_2585 +0.5 3.0 Flagellar hook-length control protein FliK compare
Pf6N2E2_3612 +0.5 1.5 HflK protein compare
Pf6N2E2_402 +0.5 1.5 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_1784 +0.5 1.3 Methyl-accepting chemotaxis protein compare
Pf6N2E2_3003 +0.5 1.0 Bacteriophage protein GP46 compare
Pf6N2E2_3270 +0.5 2.1 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_5921 +0.5 1.9 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf6N2E2_1737 +0.5 2.6 hypothetical protein compare
Pf6N2E2_2593 +0.5 3.1 Flagellar M-ring protein FliF compare
Pf6N2E2_5610 +0.5 2.7 two-component system sensor protein compare
Pf6N2E2_5621 +0.5 2.3 DNA-binding response regulator compare
Pf6N2E2_1477 +0.5 2.5 hypothetical protein compare
Pf6N2E2_4527 +0.5 1.0 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_5696 +0.5 2.4 Flagellar basal-body rod modification protein FlgD compare
Pf6N2E2_1312 +0.5 1.6 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_4059 +0.5 0.5 DNA-binding protein HU-alpha compare
Pf6N2E2_3727 +0.5 1.7 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_1162 +0.5 0.8 Transmembrane amino acid efflux protein compare
Pf6N2E2_2958 +0.5 3.1 ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) compare
Pf6N2E2_1453 +0.5 1.9 Xylose activator XylR (AraC family) compare
Pf6N2E2_5209 +0.5 2.2 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5884 +0.5 3.3 Sensor histidine kinase compare
Pf6N2E2_617 +0.5 1.4 Probable glutathione S-transferase compare
Pf6N2E2_5250 +0.5 1.5 Restriction endonuclease compare
Pf6N2E2_814 +0.5 1.7 hypothetical protein compare
Pf6N2E2_1493 +0.5 1.4 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_2201 +0.5 1.9 Transmembrane regulator protein PrtR compare
Pf6N2E2_1768 +0.5 2.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_2354 +0.5 2.4 MxiH protein; Type III secretion cytoplasmic protein (YscF) compare
Pf6N2E2_1115 +0.5 1.8 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf6N2E2_414 +0.5 1.9 Chemotaxis protein CheD compare
Pf6N2E2_648 +0.5 0.8 General secretion pathway protein K compare
Pf6N2E2_4067 +0.5 3.0 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_4598 +0.5 1.8 COG1872 compare
Pf6N2E2_500 +0.5 1.0 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_4427 +0.5 1.2 FIG00954215: hypothetical protein compare
Pf6N2E2_880 +0.5 2.2 QbdB compare
Pf6N2E2_348 +0.5 2.3 Transcriptional regulator, LysR family compare
Pf6N2E2_1158 +0.5 2.2 Cyn operon transcriptional activator compare
Pf6N2E2_2765 +0.5 2.1 Tricarboxylate transport transcriptional regulator TctD compare
Pf6N2E2_1522 +0.5 1.2 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_4181 +0.5 0.7 Organic hydroperoxide resistance protein compare
Pf6N2E2_1288 +0.5 0.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_1893 +0.5 1.6 hypothetical protein compare
Pf6N2E2_2577 +0.5 2.8 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_1043 +0.4 1.6 Transcriptional regulator, IclR family compare
Pf6N2E2_5697 +0.4 3.7 Flagellar hook protein FlgE compare
Pf6N2E2_2960 +0.4 3.7 ABC transporter for L-Lysine, permease component 2 (from data) compare
Pf6N2E2_973 +0.4 1.9 Single-stranded DNA-binding protein compare
Pf6N2E2_82 +0.4 1.2 hypothetical protein compare
Pf6N2E2_5172 +0.4 1.9 FOG: TPR repeat compare
Pf6N2E2_5001 +0.4 0.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_1695 +0.4 2.0 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme compare
Pf6N2E2_5271 +0.4 1.6 FIG00953380: hypothetical protein compare
Pf6N2E2_3179 +0.4 1.4 FIG021952: putative membrane protein compare
Pf6N2E2_2089 +0.4 1.7 Transcriptional regulator, AraC family compare
Pf6N2E2_2179 +0.4 2.3 Putrescine importer compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Citrulline in Pseudomonas fluorescens FW300-N2E2

For nitrogen source L-Citrulline across organisms