Experiment setAIT083 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Gly-Glu nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -6.1 -4.2 Probable transmembrane protein compare
Pf6N2E2_3783 -5.8 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4597 -5.7 -5.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_64 -5.4 -3.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3253 -5.4 -3.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4825 -5.2 -6.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2258 -5.1 -5.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3826 -5.0 -3.5 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5177 -5.0 -7.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_77 -5.0 -3.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_71 -5.0 -4.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4826 -5.0 -5.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3610 -4.9 -5.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3751 -4.9 -9.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3842 -4.8 -4.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3060 -4.6 -3.5 Outer membrane protein H precursor compare
Pf6N2E2_5006 -4.6 -7.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4596 -4.6 -9.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4564 -4.4 -10.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3312 -4.4 -6.0 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) conserved
Pf6N2E2_3752 -4.4 -17.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4047 -4.4 -4.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_760 -4.2 -10.9 Na+/H+ antiporter NhaB compare
Pf6N2E2_3941 -4.2 -2.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2897 -4.2 -8.9 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_3869 -4.1 -10.7 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_3311 -4.1 -7.4 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) conserved
Pf6N2E2_5175 -4.1 -10.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2885 -4.1 -4.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_4279 -4.0 -12.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3839 -4.0 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5176 -3.8 -8.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3314 -3.8 -12.8 Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) conserved
Pf6N2E2_3825 -3.8 -5.2 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3307 -3.8 -11.1 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) conserved
Pf6N2E2_3252 -3.8 -8.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5150 -3.8 -5.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4372 -3.8 -3.6 FIG00460773: hypothetical protein compare
Pf6N2E2_3940 -3.8 -10.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3782 -3.7 -3.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_658 -3.7 -11.7 sensor histidine kinase compare
Pf6N2E2_2574 -3.7 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_5558 -3.7 -11.3 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) conserved
Pf6N2E2_4048 -3.7 -7.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_302 -3.6 -6.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_63 -3.5 -6.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2274 -3.5 -5.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3885 -3.5 -4.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_5728 -3.5 -4.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3072 -3.5 -10.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_5160 -3.4 -2.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3664 -3.4 -9.2 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_1187 -3.4 -8.8 Probable nikkomycin biosynthesis protein, carboxylase compare
Pf6N2E2_4803 -3.3 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4187 -3.3 -2.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_66 -3.3 -8.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3251 -3.3 -10.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3074 -3.2 -2.0 FIG00960973: hypothetical protein compare
Pf6N2E2_4278 -3.2 -11.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3257 -3.2 -2.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3942 -3.1 -10.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2073 -3.1 -6.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3258 -3.1 -2.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_1186 -3.1 -5.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3841 -3.1 -5.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2218 -3.0 -2.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2261 -3.0 -2.9 VacJ-like lipoprotein precursor compare
Pf6N2E2_3313 -3.0 -3.7 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf6N2E2_2217 -3.0 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2117 -3.0 -13.3 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_4797 -2.9 -2.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3868 -2.9 -8.1 Transcriptional regulator, LysR family compare
Pf6N2E2_4206 -2.8 -2.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3696 -2.8 -1.8 hypothetical protein compare
Pf6N2E2_4153 -2.8 -1.9 Sensory box histidine kinase compare
Pf6N2E2_5527 -2.8 -2.7 Cold shock protein CspC compare
Pf6N2E2_2186 -2.7 -6.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_2074 -2.6 -2.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2896 -2.6 -3.3 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_3460 -2.6 -1.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3271 -2.6 -2.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4276 -2.5 -5.6 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2891 -2.5 -12.2 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_4818 -2.5 -6.2 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_5679 -2.5 -3.1 hypothetical protein compare
Pf6N2E2_2753 -2.5 -2.4 HtrA protease/chaperone protein compare
Pf6N2E2_50 -2.5 -7.7 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4611 -2.4 -4.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5723 -2.4 -11.3 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5579 -2.4 -7.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_1056 -2.3 -1.4 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_156 -2.3 -3.1 Carbon storage regulator compare
Pf6N2E2_3461 -2.3 -2.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5337 -2.3 -5.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4159 -2.3 -4.3 Cytochrome c4 compare
Pf6N2E2_2755 -2.3 -1.8 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3521 -2.2 -8.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_5338 -2.2 -8.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3984 -2.2 -9.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2465 -2.2 -6.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4759 -2.2 -12.1 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3264 -2.2 -2.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2588 -2.1 -3.2 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_5676 -2.1 -4.5 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_148 -2.1 -8.9 Membrane fusion component of tripartite multidrug resistance system compare
Pf6N2E2_6064 -2.1 -5.8 2-methylaconitate isomerase compare
Pf6N2E2_4817 -2.1 -13.8 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_5156 -2.0 -1.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3282 -2.0 -1.9 FIG005080: Possible exported protein compare
Pf6N2E2_6063 -2.0 -7.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2552 -2.0 -5.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4009 -2.0 -7.2 GGDEF domain protein compare
Pf6N2E2_3586 -2.0 -7.2 NAD synthetase (EC 6.3.1.5) compare
Pf6N2E2_2888 -2.0 -10.0 Glucose-selective porin OprB compare
Pf6N2E2_2282 -2.0 -3.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2120 -2.0 -9.5 Alpha-amylase (EC 3.2.1.1) conserved
Pf6N2E2_4638 -1.9 -1.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_6140 -1.9 -1.2 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2708 -1.9 -4.5 Lactam utilization protein LamB compare
Pf6N2E2_5524 -1.9 -11.0 Outer membrane porin, OprD family compare
Pf6N2E2_2889 -1.9 -8.1 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_2962 -1.9 -1.8 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_3300 -1.9 -3.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_1673 -1.8 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_3871 -1.8 -10.6 FIG00553872: hypothetical protein compare
Pf6N2E2_149 -1.8 -7.5 Inner membrane component of tripartite multidrug resistance system compare
Pf6N2E2_2508 -1.8 -4.1 hypothetical protein compare
Pf6N2E2_3938 -1.8 -9.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_2675 -1.8 -1.3 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4764 -1.8 -5.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_3666 -1.8 -3.1 InaA protein compare
Pf6N2E2_5664 -1.7 -5.2 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_3170 -1.7 -4.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2340 -1.7 -4.2 Transcriptional regulator, GntR family compare
Pf6N2E2_5242 -1.7 -2.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2253 -1.7 -2.5 hypothetical protein compare
Pf6N2E2_4678 -1.7 -1.3 hypothetical protein compare
Pf6N2E2_2706 -1.7 -2.2 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_2746 -1.6 -6.3 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_4277 -1.6 -7.5 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_5316 -1.6 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2892 -1.6 -8.2 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_3835 -1.6 -3.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4813 -1.5 -7.4 Probable two-component sensor, near polyamine transporter compare
Pf6N2E2_4205 -1.5 -3.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3611 -1.5 -1.1 HflC protein compare
Pf6N2E2_1932 -1.5 -4.5 Transcriptional regulator, IclR family compare
Pf6N2E2_3373 -1.5 -1.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2960 -1.5 -9.0 ABC transporter for L-Lysine, permease component 2 (from data) compare
Pf6N2E2_3260 -1.5 -3.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4763 -1.5 -7.2 Biotin synthesis protein BioC compare
Pf6N2E2_600 -1.5 -2.9 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3807 -1.5 -3.5 Histidine utilization repressor compare
Pf6N2E2_3786 -1.4 -2.5 Twin-arginine translocation protein TatC compare
Pf6N2E2_114 -1.4 -2.4 Polysaccharide biosynthesis protein compare
Pf6N2E2_2959 -1.4 -6.8 ABC transporter for L-Lysine, permease component 1 (from data) compare
Pf6N2E2_4454 -1.4 -4.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5014 -1.4 -1.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5339 -1.4 -5.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2586 -1.4 -1.5 Hpt domain protein compare
Pf6N2E2_1147 -1.4 -2.7 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_2895 -1.4 -6.5 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_2958 -1.3 -6.7 ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) compare
Pf6N2E2_2707 -1.3 -2.8 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_3183 -1.3 -2.3 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_922 -1.3 -3.0 FIG00794167: hypothetical protein compare
Pf6N2E2_3505 -1.3 -1.4 Translation initiation factor SUI1-related protein compare
Pf6N2E2_70 -1.3 -3.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_1116 -1.3 -1.8 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_2527 -1.3 -3.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2795 -1.3 -1.6 putative exported protein compare
Pf6N2E2_2506 -1.3 -8.5 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_147 -1.3 -7.4 Outer membrane component of tripartite multidrug resistance system compare
Pf6N2E2_2693 -1.3 -1.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4072 -1.3 -3.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2890 -1.3 -5.4 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_728 -1.3 -2.6 Nitrate/nitrite transporter compare
Pf6N2E2_5157 -1.3 -6.3 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3270 -1.3 -2.9 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_420 -1.3 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_1305 -1.2 -2.4 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_3305 -1.2 -3.0 hypothetical protein compare
Pf6N2E2_4548 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_1972 -1.2 -2.1 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_4155 -1.2 -6.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1165 -1.2 -3.6 hypothetical protein compare
Pf6N2E2_4416 -1.2 -2.1 Tyrosine recombinase XerC compare
Pf6N2E2_5258 -1.2 -5.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_4631 -1.2 -5.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_4987 -1.2 -1.2 MaoC-like domain protein compare
Pf6N2E2_5494 -1.2 -3.7 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_3344 -1.2 -2.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_6099 -1.1 -1.2 tRNA-Glu-TTC compare
Pf6N2E2_1749 -1.1 -2.9 Cyn operon transcriptional activator compare
Pf6N2E2_2413 -1.1 -1.8 FIG074102: hypothetical protein compare
Pf6N2E2_5300 -1.1 -7.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2938 -1.1 -3.2 Outer membrane lipoprotein compare
Pf6N2E2_2317 -1.1 -2.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5780 -1.1 -5.7 Periplasmic protease compare
Pf6N2E2_2899 -1.1 -3.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare


Specific Phenotypes

For 23 genes in this experiment

For nitrogen source Gly-Glu in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Gly-Glu across organisms