Experiment setAIT079 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Phenylalanine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_180 +1.3 6.1 Transcriptional regulator, MerR family compare
Pf6N2E2_3037 +1.1 8.8 RNA polymerase sigma factor RpoS compare
Pf6N2E2_2578 +1.0 3.0 Flagellar biosynthesis protein FliR compare
Pf6N2E2_1806 +1.0 2.4 hypothetical protein compare
Pf6N2E2_5816 +1.0 2.1 Smr domain protein compare
Pf6N2E2_3307 +0.9 6.2 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) compare
Pf6N2E2_3792 +0.9 4.9 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5272 +0.9 3.6 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_546 +0.9 1.8 FIG00966904: hypothetical protein compare
Pf6N2E2_1774 +0.8 1.6 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_445 +0.8 4.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_4305 +0.8 1.4 FIG00959590: hypothetical protein compare
Pf6N2E2_1613 +0.8 2.9 short-chain dehydrogenase/reductase compare
Pf6N2E2_1124 +0.8 1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3313 +0.8 4.4 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf6N2E2_2912 +0.8 1.2 FIG00954094: hypothetical protein compare
Pf6N2E2_2788 +0.8 2.3 Transcriptional regulator, AsnC family compare
Pf6N2E2_88 +0.8 1.7 hypothetical protein compare
Pf6N2E2_4025 +0.7 1.7 hypothetical protein compare
Pf6N2E2_1106 +0.7 2.7 Chromosome initiation inhibitor compare
Pf6N2E2_1720 +0.7 2.7 hypothetical protein compare
Pf6N2E2_2406 +0.7 4.1 Periplasmic binding protein compare
Pf6N2E2_689 +0.7 1.6 FIG00956189: hypothetical protein compare
Pf6N2E2_746 +0.7 1.4 FIG00958097: hypothetical protein compare
Pf6N2E2_3096 +0.7 1.2 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3255 +0.7 2.5 YrbA protein compare
Pf6N2E2_2962 +0.7 2.2 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_1028 +0.7 2.5 Transcriptional regulator, LysR family compare
Pf6N2E2_339 +0.7 2.2 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_2593 +0.7 3.4 Flagellar M-ring protein FliF compare
Pf6N2E2_5252 +0.7 1.5 FIG00956396: hypothetical protein compare
Pf6N2E2_663 +0.7 2.9 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_4331 +0.7 2.3 hypothetical protein compare
Pf6N2E2_3326 +0.7 1.6 hypothetical protein compare
Pf6N2E2_413 +0.7 1.8 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_3206 +0.7 1.5 hypothetical protein compare
Pf6N2E2_906 +0.7 1.6 ISPpu14, transposase Orf2 compare
Pf6N2E2_5207 +0.7 1.1 hypothetical protein compare
Pf6N2E2_447 +0.7 3.0 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_2496 +0.6 1.4 FIG00956575: hypothetical protein compare
Pf6N2E2_2503 +0.6 1.1 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5023 +0.6 3.3 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Pf6N2E2_2156 +0.6 1.9 Putative polyketide synthase (Fragment) compare
Pf6N2E2_623 +0.6 1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_5345 +0.6 3.9 LppC putative lipoprotein compare
Pf6N2E2_1839 +0.6 1.5 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_3311 +0.6 3.0 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) compare
Pf6N2E2_2984 +0.6 1.3 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_2196 +0.6 3.0 FIG00953347: hypothetical protein compare
Pf6N2E2_5274 +0.6 3.8 FolM Alternative dihydrofolate reductase 1 compare
Pf6N2E2_1975 +0.6 2.2 Integrase regulator R compare
Pf6N2E2_3844 +0.6 0.9 hypothetical protein compare
Pf6N2E2_3314 +0.6 4.6 Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) compare
Pf6N2E2_4160 +0.6 1.0 Cytochrome c5 compare
Pf6N2E2_1185 +0.6 3.2 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_493 +0.6 2.2 YD repeat protein compare
Pf6N2E2_1168 +0.6 2.1 Transposase compare
Pf6N2E2_6022 +0.6 1.7 StbE replicon stabilization toxin compare
Pf6N2E2_2849 +0.6 2.0 Chromosome initiation inhibitor compare
Pf6N2E2_3956 +0.6 1.9 FIG00960943: hypothetical protein compare
Pf6N2E2_5757 +0.6 2.1 hypothetical protein compare
Pf6N2E2_5609 +0.6 2.9 DNA-binding response regulator ColR compare
Pf6N2E2_5672 +0.6 2.2 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
Pf6N2E2_6018 +0.6 2.2 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3466 +0.6 1.3 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_3308 +0.6 4.0 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) compare
Pf6N2E2_5240 +0.6 3.2 FIG00953775: hypothetical protein compare
Pf6N2E2_6047 +0.5 0.7 hypothetical protein compare
Pf6N2E2_2081 +0.5 1.3 putative exported protein compare
Pf6N2E2_1656 +0.5 1.2 hypothetical protein compare
Pf6N2E2_848 +0.5 1.4 hypothetical protein compare
Pf6N2E2_1404 +0.5 1.2 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_1603 +0.5 1.6 hypothetical protein compare
Pf6N2E2_3980 +0.5 4.0 Type I secretion system, outer membrane component LapE compare
Pf6N2E2_2734 +0.5 2.6 Transcriptional regulator, LysR family compare
Pf6N2E2_617 +0.5 1.9 Probable glutathione S-transferase compare
Pf6N2E2_3870 +0.5 1.8 hypothetical protein compare
Pf6N2E2_6130 +0.5 1.7 5S RNA compare
Pf6N2E2_2213 +0.5 2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5768 +0.5 2.1 DNA recombination-dependent growth factor C compare
Pf6N2E2_819 +0.5 2.0 Response regulator compare
Pf6N2E2_5584 +0.5 1.8 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_3293 +0.5 1.8 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_1761 +0.5 1.8 Transcriptional regulator, LysR family compare
Pf6N2E2_649 +0.5 1.0 General secretion pathway protein L compare
Pf6N2E2_5560 +0.5 2.1 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_1471 +0.5 2.0 Dienelactone hydrolase and related enzymes compare
Pf6N2E2_2404 +0.5 2.9 Sigma factor PvdS, controling pyoverdin biosynthesis compare
Pf6N2E2_1984 +0.5 1.8 probable exported protein STY4558 compare
Pf6N2E2_3108 +0.5 1.2 FIG00953405: hypothetical protein compare
Pf6N2E2_5758 +0.5 1.4 FIG00957314: hypothetical protein compare
Pf6N2E2_5073 +0.5 1.1 Large-conductance mechanosensitive channel compare
Pf6N2E2_5920 +0.5 1.8 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare
Pf6N2E2_4059 +0.5 0.6 DNA-binding protein HU-alpha compare
Pf6N2E2_3791 +0.5 3.7 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2235 +0.5 2.2 Xanthine permease compare
Pf6N2E2_2350 +0.5 1.6 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_3309 +0.5 3.5 Outer membrane porin, OprD family compare
Pf6N2E2_6067 +0.5 2.2 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf6N2E2_4340 +0.5 1.9 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf6N2E2_4506 +0.5 1.1 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_423 +0.5 0.9 Putative phosphatase YfbT compare
Pf6N2E2_3204 +0.5 1.1 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_2589 +0.5 2.0 Flagellar protein FliJ compare
Pf6N2E2_4333 +0.5 2.0 Uncharacterized protein ImpD compare
Pf6N2E2_5610 +0.5 2.6 two-component system sensor protein compare
Pf6N2E2_1754 +0.5 1.7 FIG00731982: hypothetical protein compare
Pf6N2E2_2724 +0.5 2.5 Nitroreductase family protein compare
Pf6N2E2_1782 +0.5 1.5 STAS domain protein compare
Pf6N2E2_725 +0.5 2.5 Nitrate/nitrite response regulator protein compare
Pf6N2E2_1157 +0.5 1.8 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_4478 +0.5 3.1 FIG019278: hypothetical protein compare
Pf6N2E2_5761 +0.5 1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_4369 +0.5 1.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3624 +0.5 2.8 Flagellar motor rotation protein MotB compare
Pf6N2E2_4895 +0.5 2.4 Isochorismatase (EC 3.3.2.1) compare
Pf6N2E2_1598 +0.5 1.3 Nitrate reductase cytochrome c550-type subunit compare
Pf6N2E2_3761 +0.5 4.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_440 +0.5 1.2 FIG00954920: hypothetical protein compare
Pf6N2E2_243 +0.5 2.5 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) compare
Pf6N2E2_924 +0.5 1.1 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_1787 +0.5 2.4 ribosomal protein S6 glutaminyl transferase related protein compare
Pf6N2E2_21 +0.5 2.0 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf6N2E2_1211 +0.5 0.8 Lactoylglutathione lyase compare
Pf6N2E2_5172 +0.5 2.0 FOG: TPR repeat compare
Pf6N2E2_3546 +0.5 1.2 ABC transporter (iron.B12.siderophore.hemin) , permease component compare
Pf6N2E2_5134 +0.5 2.0 FIG060329: MOSC domain protein compare
Pf6N2E2_2296 +0.5 1.5 FIG00954767: hypothetical protein compare
Pf6N2E2_1464 +0.4 1.8 hypothetical protein compare
Pf6N2E2_5455 +0.4 1.6 hypothetical protein compare
Pf6N2E2_4121 +0.4 1.7 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_2247 +0.4 1.7 Transcriptional regulator, AraC family compare
Pf6N2E2_5237 +0.4 1.1 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_6074 +0.4 2.3 Redox-sensitive transcriptional activator SoxR compare
Pf6N2E2_5621 +0.4 1.5 DNA-binding response regulator compare
Pf6N2E2_2808 +0.4 2.0 LemA family protein compare
Pf6N2E2_5502 +0.4 2.4 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases compare
Pf6N2E2_353 +0.4 2.8 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_1108 +0.4 1.8 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_1525 +0.4 2.1 Universal stress protein family 5 compare
Pf6N2E2_5128 +0.4 1.8 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_82 +0.4 1.3 hypothetical protein compare
Pf6N2E2_923 +0.4 0.9 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_2579 +0.4 2.4 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_3171 +0.4 0.8 hypothetical protein compare
Pf6N2E2_2582 +0.4 1.1 Flagellar motor switch protein FliN compare
Pf6N2E2_1838 +0.4 1.5 6-hexanolactone hydrolase compare
Pf6N2E2_2252 +0.4 1.5 NreA-like protein compare
Pf6N2E2_3557 +0.4 0.6 Chaperone-modulator protein CbpM compare
Pf6N2E2_6040 +0.4 1.7 hypothetical protein compare
Pf6N2E2_2592 +0.4 2.0 Flagellar motor switch protein FliG compare
Pf6N2E2_1113 +0.4 1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_891 +0.4 1.5 4-oxalocrotonate tautomerase compare
Pf6N2E2_1337 +0.4 1.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3570 +0.4 2.1 Urease accessory protein UreE compare
Pf6N2E2_4336 +0.4 2.4 Uncharacterized protein ImpA compare
Pf6N2E2_1714 +0.4 1.6 FIG01218476: hypothetical protein compare
Pf6N2E2_5993 +0.4 0.7 FIG00957412: hypothetical protein compare
Pf6N2E2_3270 +0.4 1.4 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4010 +0.4 2.1 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf6N2E2_5555 +0.4 0.6 Cold shock protein CspA compare
Pf6N2E2_3134 +0.4 0.6 hypothetical protein compare
Pf6N2E2_4737 +0.4 2.1 Two-component response regulator CreB compare
Pf6N2E2_2657 +0.4 2.1 Cytosine/purine/uracil/thiamine/allantoin permease family protein compare
Pf6N2E2_2754 +0.4 1.6 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_1591 +0.4 2.2 hypothetical protein compare
Pf6N2E2_1966 +0.4 1.1 SAM-dependent methyltransferases compare
Pf6N2E2_4562 +0.4 1.4 L-cystine uptake protein TcyP compare
Pf6N2E2_3328 +0.4 0.8 transcriptional regulator compare
Pf6N2E2_4974 +0.4 2.0 DedA protein compare
Pf6N2E2_5664 +0.4 2.1 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_94 +0.4 1.6 Cyn operon transcriptional activator compare
Pf6N2E2_2949 +0.4 2.5 UPF0225 protein YchJ compare
Pf6N2E2_1935 +0.4 1.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3472 +0.4 1.2 Probable short-chain dehydrogenase compare
Pf6N2E2_583 +0.4 2.8 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_3978 +0.4 3.3 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_2057 +0.4 2.8 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf6N2E2_4499 +0.4 0.9 protein of unknown function DUF86 compare
Pf6N2E2_86 +0.4 1.8 FIG022160: hypothetical toxin compare
Pf6N2E2_3679 +0.4 2.1 Protein involved in catabolism of external DNA compare
Pf6N2E2_1617 +0.4 0.5 COG2199: FOG: GGDEF domain compare
Pf6N2E2_5324 +0.4 2.2 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf6N2E2_4056 +0.4 1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4339 +0.4 2.8 Uncharacterized protein ImpJ/VasE compare
Pf6N2E2_3008 +0.4 1.3 FIG00954242: hypothetical protein compare
Pf6N2E2_3981 +0.4 3.4 T1SS secreted agglutinin RTX compare
Pf6N2E2_880 +0.4 2.4 QbdB compare
Pf6N2E2_946 +0.4 1.3 Transcriptional regulator, LysR family compare
Pf6N2E2_1246 +0.4 0.9 FIG00961372: hypothetical protein compare
Pf6N2E2_670 +0.4 1.9 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf6N2E2_5087 +0.4 1.6 Transcription elongation factor GreB-related protein compare
Pf6N2E2_1654 +0.4 1.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3763 +0.4 1.2 hypothetical protein compare
Pf6N2E2_4348 +0.4 2.2 Autotransporter adhesin compare
Pf6N2E2_3179 +0.4 1.5 FIG021952: putative membrane protein compare
Pf6N2E2_4715 +0.4 1.9 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_239 +0.4 2.2 Fatty acid desaturase compare
Pf6N2E2_1099 +0.4 0.8 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_186 +0.4 1.8 Urea ABC transporter, ATPase protein UrtD compare


Specific Phenotypes

For 18 genes in this experiment

For nitrogen source L-Phenylalanine in Pseudomonas fluorescens FW300-N2E2

For nitrogen source L-Phenylalanine across organisms