Experiment setAIT075 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Glycine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3783 -6.3 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3610 -6.1 -4.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4597 -6.1 -6.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5556 -6.0 -5.9 Aminomethyltransferase (EC 2.1.2.10) (from data) conserved
Pf6N2E2_5006 -5.9 -4.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_64 -5.9 -4.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4825 -5.8 -5.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3248 -5.7 -5.5 Probable transmembrane protein compare
Pf6N2E2_4826 -5.6 -6.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_77 -5.5 -3.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3751 -5.5 -9.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4596 -5.5 -7.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_71 -5.5 -5.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_50 -5.4 -7.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3253 -5.1 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3752 -5.0 -17.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5558 -5.0 -10.7 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) conserved
Pf6N2E2_4077 -4.9 -3.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2258 -4.9 -10.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3621 -4.9 -10.5 putative transporter, required for glycine utilization (from data) conserved
Pf6N2E2_5176 -4.8 -7.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_1187 -4.8 -8.6 Probable nikkomycin biosynthesis protein, carboxylase compare
Pf6N2E2_4047 -4.8 -4.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4048 -4.8 -7.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4759 -4.7 -14.3 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_4394 -4.6 -7.7 Putrescine utilization regulator compare
Pf6N2E2_3782 -4.6 -3.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3825 -4.6 -5.4 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_4564 -4.5 -11.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_66 -4.5 -9.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2885 -4.5 -5.3 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3842 -4.4 -5.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2073 -4.4 -5.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5150 -4.3 -5.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1186 -4.3 -6.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5175 -4.3 -12.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4206 -4.2 -2.9 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3940 -4.2 -11.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4412 -4.2 -12.2 Ammonium transporter conserved
Pf6N2E2_5177 -4.2 -10.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3826 -4.1 -6.9 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5014 -4.1 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3839 -4.1 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_658 -4.0 -12.8 sensor histidine kinase compare
Pf6N2E2_3554 -4.0 -10.4 GCN5-related N-acetyltransferase compare
Pf6N2E2_3252 -4.0 -8.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4353 -3.9 -5.8 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2074 -3.8 -2.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4071 -3.8 -5.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4279 -3.8 -13.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2897 -3.7 -10.8 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_3841 -3.7 -6.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5559 -3.6 -11.2 Glycine cleavage system H protein conserved
Pf6N2E2_4476 -3.5 -6.6 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_5527 -3.3 -3.2 Cold shock protein CspC compare
Pf6N2E2_2574 -3.3 -3.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_5560 -3.2 -3.8 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_2890 -3.2 -10.2 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_2896 -3.2 -5.3 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_4278 -3.2 -12.3 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5557 -3.2 -12.4 L-serine ammonia-lyase (EC 4.3.1.17) (from data) conserved
Pf6N2E2_1188 -3.1 -6.6 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_5579 -3.0 -8.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4797 -3.0 -2.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5316 -3.0 -2.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4372 -3.0 -5.4 FIG00460773: hypothetical protein compare
Pf6N2E2_3251 -3.0 -9.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1189 -3.0 -7.2 Thioredoxin reductase (EC 1.8.1.9) compare
Pf6N2E2_1424 -2.9 -3.1 transcriptional regulator, TetR family compare
Pf6N2E2_5156 -2.9 -2.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2513 -2.8 -5.6 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2892 -2.7 -11.9 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_3942 -2.7 -11.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5103 -2.7 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5666 -2.7 -9.2 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3170 -2.7 -7.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2889 -2.6 -8.8 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_4638 -2.6 -1.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2588 -2.6 -2.2 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2891 -2.6 -11.6 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_2895 -2.6 -9.7 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_5242 -2.5 -2.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4009 -2.5 -9.2 GGDEF domain protein compare
Pf6N2E2_3349 -2.4 -3.6 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3607 -2.4 -8.6 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5667 -2.4 -5.6 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2893 -2.4 -7.2 hypothetical protein compare
Pf6N2E2_4624 -2.4 -1.5 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4277 -2.4 -9.6 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3984 -2.3 -10.7 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3072 -2.3 -10.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_5155 -2.3 -3.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1190 -2.3 -5.5 Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase compare
Pf6N2E2_4764 -2.2 -6.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2753 -2.2 -3.1 HtrA protease/chaperone protein compare
Pf6N2E2_5049 -2.1 -2.8 acetyltransferase, GNAT family compare
Pf6N2E2_5679 -2.1 -4.3 hypothetical protein compare
Pf6N2E2_5950 -2.1 -4.5 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3807 -2.1 -4.3 Histidine utilization repressor compare
Pf6N2E2_3620 -2.1 -6.7 Epoxyqueuosine (oQ) reductase QueG compare
Pf6N2E2_4417 -2.0 -4.7 Protein of unknown function DUF484 compare
Pf6N2E2_63 -2.0 -2.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3685 -1.9 -11.6 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) compare
Pf6N2E2_5945 -1.9 -4.5 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C compare
Pf6N2E2_3264 -1.9 -2.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5160 -1.8 -2.0 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_1191 -1.8 -7.2 Thiaminase II (EC 3.5.99.2) compare
Pf6N2E2_4025 -1.8 -1.9 hypothetical protein compare
Pf6N2E2_3593 -1.8 -10.1 Protein containing domains DUF404, DUF407, DUF403 compare
Pf6N2E2_1932 -1.8 -5.2 Transcriptional regulator, IclR family compare
Pf6N2E2_5728 -1.8 -4.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5190 -1.8 -8.4 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_2117 -1.7 -10.6 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_2586 -1.7 -1.9 Hpt domain protein compare
Pf6N2E2_3460 -1.7 -1.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5258 -1.7 -7.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3661 -1.7 -4.7 hypothetical protein compare
Pf6N2E2_4762 -1.7 -3.0 Biotin synthesis protein BioH compare
Pf6N2E2_2465 -1.6 -3.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2510 -1.6 -4.2 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5555 -1.6 -1.4 Cold shock protein CspA compare
Pf6N2E2_1972 -1.6 -2.5 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_4761 -1.6 -7.4 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2068 -1.6 -7.5 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_302 -1.6 -3.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2863 -1.6 -4.6 Gluconate permease compare
Pf6N2E2_2480 -1.5 -1.3 FIG00957636: hypothetical protein compare
Pf6N2E2_2675 -1.5 -1.3 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2253 -1.5 -3.0 hypothetical protein compare
Pf6N2E2_4763 -1.5 -7.3 Biotin synthesis protein BioC compare
Pf6N2E2_70 -1.4 -3.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3820 -1.4 -1.5 hypothetical protein compare
Pf6N2E2_16 -1.4 -1.8 hypothetical protein compare
Pf6N2E2_2706 -1.4 -2.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_3480 -1.4 -1.6 Transcriptional regulator, ArsR family compare
Pf6N2E2_3060 -1.4 -2.0 Outer membrane protein H precursor compare
Pf6N2E2_4631 -1.4 -7.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_5494 -1.4 -4.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2048 -1.4 -5.1 Transcriptional regulator, IclR family compare
Pf6N2E2_4803 -1.4 -1.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3300 -1.3 -2.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2022 -1.3 -4.9 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_4205 -1.3 -3.1 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5188 -1.3 -3.9 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3592 -1.3 -6.6 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_3938 -1.3 -7.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_2640 -1.3 -1.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3461 -1.3 -1.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5219 -1.3 -5.8 FIG140336: TPR domain protein compare
Pf6N2E2_3667 -1.3 -1.1 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_331 -1.3 -2.9 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_5257 -1.3 -6.5 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2501 -1.3 -3.1 hypothetical protein compare
Pf6N2E2_2527 -1.3 -3.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2864 -1.3 -1.5 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_953 -1.3 -2.2 FIG00958851: hypothetical protein compare
Pf6N2E2_2899 -1.3 -4.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_5536 -1.2 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4813 -1.2 -7.4 Probable two-component sensor, near polyamine transporter compare
Pf6N2E2_3271 -1.2 -1.4 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5669 -1.2 -5.2 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_3198 -1.2 -2.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3340 -1.2 -6.2 Fructose repressor FruR, LacI family compare
Pf6N2E2_2264 -1.2 -2.5 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_482 -1.1 -2.6 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_5544 -1.1 -4.5 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2218 -1.1 -3.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5545 -1.1 -2.6 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_4369 -1.1 -1.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3835 -1.1 -2.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_682 -1.1 -3.6 Predicted regulator PutR for proline utilization, GntR family compare
Pf6N2E2_704 -1.1 -3.3 Cytochrome c551/c552 compare
Pf6N2E2_6057 -1.1 -1.8 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2088 -1.1 -2.0 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_4686 -1.1 -6.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_2286 -1.1 -2.6 FIG00953287: hypothetical protein compare
Pf6N2E2_3744 -1.1 -1.9 General secretion pathway protein F compare
Pf6N2E2_5252 -1.1 -1.8 FIG00956396: hypothetical protein compare
Pf6N2E2_5337 -1.1 -3.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_1705 -1.1 -1.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4187 -1.1 -2.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2425 -1.0 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1082 -1.0 -1.5 CopG protein compare
Pf6N2E2_2309 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_5081 -1.0 -3.0 hypothetical protein compare
Pf6N2E2_1987 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_5714 -1.0 -2.3 Flavoprotein WrbA compare
Pf6N2E2_2716 -1.0 -2.9 FIG00954793: hypothetical protein compare
Pf6N2E2_2674 -1.0 -1.2 FIG00953856: hypothetical protein compare
Pf6N2E2_2007 -1.0 -3.4 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_2311 -1.0 -4.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4508 -1.0 -3.1 Transcriptional regulator, TetR family compare
Pf6N2E2_4162 -1.0 -2.3 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2708 -1.0 -2.9 Lactam utilization protein LamB compare
Pf6N2E2_605 -1.0 -2.2 FIG002465: BNR repeat protein compare
Pf6N2E2_238 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_37 -1.0 -2.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3039 -1.0 -3.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2852 -1.0 -5.0 GGDEF domain/EAL domain protein compare
Pf6N2E2_2188 -1.0 -2.7 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare


Specific Phenotypes

For 17 genes in this experiment

For nitrogen source Glycine in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Glycine across organisms