Experiment setAIT074 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Glutamine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -6.6 -4.6 Probable transmembrane protein compare
Pf6N2E2_4597 -6.1 -5.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_64 -5.9 -4.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4825 -5.9 -5.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4826 -5.7 -5.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3783 -5.5 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_71 -5.5 -5.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3630 -5.2 -6.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_77 -5.2 -5.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5258 -5.2 -7.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_4596 -5.2 -8.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3842 -5.1 -4.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3251 -5.1 -9.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3253 -4.8 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_302 -4.8 -6.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_50 -4.8 -9.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3610 -4.6 -7.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5177 -4.6 -11.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4048 -4.6 -7.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4759 -4.6 -14.7 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_2073 -4.6 -4.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5176 -4.6 -8.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5175 -4.5 -12.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4047 -4.5 -5.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3839 -4.4 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3762 -4.3 -7.2 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_4761 -4.3 -12.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_3782 -4.2 -4.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3841 -4.1 -6.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4564 -4.0 -9.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4763 -4.0 -11.5 Biotin synthesis protein BioC compare
Pf6N2E2_4762 -4.0 -4.5 Biotin synthesis protein BioH compare
Pf6N2E2_5527 -4.0 -2.7 Cold shock protein CspC compare
Pf6N2E2_4797 -4.0 -2.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4803 -3.8 -2.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3940 -3.8 -11.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4764 -3.8 -6.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2074 -3.8 -2.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3932 -3.8 -4.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5676 -3.7 -4.8 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3252 -3.5 -8.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_66 -3.5 -8.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3261 -3.5 -4.7 hypothetical protein compare
Pf6N2E2_2885 -3.5 -7.6 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5950 -3.4 -4.6 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_5257 -3.4 -10.1 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_4631 -3.3 -10.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_63 -3.2 -6.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2574 -3.0 -2.6 Flagellar synthesis regulator FleN compare
Pf6N2E2_5316 -3.0 -2.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2465 -2.9 -7.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_51 -2.9 -7.2 hypothetical protein compare
Pf6N2E2_3349 -2.6 -3.4 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5579 -2.6 -6.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4187 -2.6 -4.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_1717 -2.5 -9.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_1718 -2.4 -4.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_5728 -2.4 -3.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4638 -2.4 -2.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3170 -2.4 -6.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4418 -2.4 -1.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3534 -2.3 -2.9 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3938 -2.3 -10.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3984 -2.3 -9.7 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3763 -2.2 -2.7 hypothetical protein compare
Pf6N2E2_4399 -2.1 -6.1 GGDEF domain/EAL domain protein compare
Pf6N2E2_2588 -2.0 -3.9 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_4278 -2.0 -7.7 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_6065 -2.0 -3.1 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_4279 -2.0 -10.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2010 -1.9 -2.5 hypothetical protein compare
Pf6N2E2_3908 -1.9 -6.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_451 -1.9 -3.0 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_5156 -1.9 -2.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5006 -1.9 -6.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5242 -1.8 -2.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4601 -1.8 -2.5 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5746 -1.8 -3.6 Cobalamin synthase compare
Pf6N2E2_5190 -1.7 -8.7 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_2513 -1.7 -3.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3198 -1.7 -2.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2064 -1.7 -2.7 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3661 -1.7 -4.6 hypothetical protein compare
Pf6N2E2_4009 -1.7 -8.6 GGDEF domain protein compare
Pf6N2E2_5943 -1.7 -3.0 hypothetical protein compare
Pf6N2E2_1040 -1.6 -1.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4277 -1.6 -7.9 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2897 -1.5 -6.6 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_5745 -1.5 -6.0 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Pf6N2E2_5001 -1.5 -1.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_70 -1.5 -2.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2068 -1.5 -6.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_5738 -1.4 -6.7 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_4372 -1.4 -4.6 FIG00460773: hypothetical protein compare
Pf6N2E2_5155 -1.4 -2.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2967 -1.4 -2.2 Cold shock protein CspA compare
Pf6N2E2_3535 -1.4 -4.9 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf6N2E2_204 -1.4 -1.9 hypothetical protein compare
Pf6N2E2_2061 -1.4 -4.4 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_3537 -1.4 -4.3 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_1705 -1.3 -1.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_987 -1.3 -2.0 hypothetical protein compare
Pf6N2E2_3607 -1.3 -6.6 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5869 -1.3 -2.3 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_5740 -1.3 -4.5 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_4417 -1.3 -3.0 Protein of unknown function DUF484 compare
Pf6N2E2_5919 -1.3 -2.3 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_1870 -1.3 -2.7 hypothetical protein compare
Pf6N2E2_395 -1.3 -3.3 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2080 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_2261 -1.3 -5.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_2852 -1.2 -6.6 GGDEF domain/EAL domain protein compare
Pf6N2E2_5153 -1.2 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_4636 -1.2 -4.1 periplasmic binding protein, putative compare
Pf6N2E2_3941 -1.2 -3.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2060 -1.2 -7.0 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_5471 -1.2 -5.3 Transcriptional activator MetR conserved
Pf6N2E2_5742 -1.2 -4.2 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_2510 -1.2 -2.8 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_1014 -1.2 -1.3 Nitrate/nitrite transporter compare
Pf6N2E2_3531 -1.2 -4.1 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_5331 -1.2 -4.9 ATPase, AFG1 family compare
Pf6N2E2_3300 -1.2 -3.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3108 -1.2 -2.3 FIG00953405: hypothetical protein compare
Pf6N2E2_5049 -1.2 -2.0 acetyltransferase, GNAT family compare
Pf6N2E2_1502 -1.2 -1.9 Two-component system regulatory protein compare
Pf6N2E2_2895 -1.2 -5.1 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_2572 -1.2 -2.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2281 -1.2 -2.4 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_5252 -1.1 -1.6 FIG00956396: hypothetical protein compare
Pf6N2E2_5986 -1.1 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1626 -1.1 -5.3 Putative ATP-binding component of a transport system compare
Pf6N2E2_3258 -1.1 -3.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4963 -1.1 -1.5 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_2059 -1.1 -2.6 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_3847 -1.1 -2.5 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3328 -1.1 -1.5 transcriptional regulator compare
Pf6N2E2_3533 -1.1 -3.0 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_4824 -1.1 -2.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_2065 -1.1 -3.0 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_2413 -1.0 -1.8 FIG074102: hypothetical protein compare
Pf6N2E2_5337 -1.0 -3.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3536 -1.0 -3.6 Cobalt-precorrin-6 synthase, anaerobic compare
Pf6N2E2_5219 -1.0 -4.6 FIG140336: TPR domain protein compare
Pf6N2E2_2891 -1.0 -6.9 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_4276 -1.0 -2.7 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2646 -1.0 -1.0 FIG00953416: hypothetical protein compare
Pf6N2E2_3257 -1.0 -2.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3264 -1.0 -1.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2855 -1.0 -2.7 DGPFAETKE compare
Pf6N2E2_3603 -1.0 -3.6 FIG003573: hypothetical protein compare
Pf6N2E2_622 -1.0 -3.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_2896 -1.0 -2.5 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_3461 -1.0 -1.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2340 -1.0 -3.3 Transcriptional regulator, GntR family compare
Pf6N2E2_3532 -1.0 -3.4 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_5430 -0.9 -4.8 Transglycosylase, Slt family compare
Pf6N2E2_3611 -0.9 -1.2 HflC protein compare
Pf6N2E2_2139 -0.9 -1.8 Paraquat-inducible protein A compare
Pf6N2E2_5743 -0.9 -3.8 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_868 -0.9 -1.6 Transcriptional regulator, HxlR family compare
Pf6N2E2_5178 -0.9 -1.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2285 -0.9 -1.2 FIG00954079: hypothetical protein compare
Pf6N2E2_5703 -0.9 -3.5 outer membrane protein H1 compare
Pf6N2E2_2277 -0.9 -1.1 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5261 -0.9 -0.9 FIG00956983: hypothetical protein compare
Pf6N2E2_3283 -0.9 -3.8 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_5741 -0.9 -3.0 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_4392 -0.9 -1.8 Translation initiation inhibitor compare
Pf6N2E2_3460 -0.9 -1.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2893 -0.9 -3.0 hypothetical protein compare
Pf6N2E2_2549 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_4205 -0.9 -2.6 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_568 -0.9 -2.7 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) compare
Pf6N2E2_4743 -0.9 -0.7 hypothetical protein compare
Pf6N2E2_1758 -0.9 -1.5 Transcriptional regulator, MarR family compare
Pf6N2E2_4084 -0.9 -3.1 Transcriptional regulator compare
Pf6N2E2_1156 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_4476 -0.9 -4.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_4691 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_663 -0.9 -2.2 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_552 -0.9 -2.4 Uncharacterized protein ImpF compare
Pf6N2E2_1694 -0.9 -1.1 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1317 -0.9 -1.9 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_3753 -0.9 -6.2 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_5188 -0.9 -3.2 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_384 -0.9 -2.1 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2889 -0.9 -4.7 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_2312 -0.9 -1.6 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_5342 -0.9 -1.8 21 kDa hemolysin precursor compare
Pf6N2E2_5181 -0.9 -5.6 Paraquat-inducible protein A compare
Pf6N2E2_3100 -0.9 -1.7 FIG00953063: hypothetical protein compare
Pf6N2E2_5111 -0.9 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_5546 -0.8 -3.9 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_2864 -0.8 -1.3 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_888 -0.8 -1.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2018 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_2534 -0.8 -2.1 Cell division protein BolA compare
Pf6N2E2_2218 -0.8 -2.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_1606 -0.8 -3.4 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Glutamine in Pseudomonas fluorescens FW300-N2E2

For nitrogen source L-Glutamine across organisms