Experiment setAIT073 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Asparagine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -6.7 -4.6 Probable transmembrane protein compare
Pf6N2E2_4826 -6.2 -4.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4825 -5.9 -5.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3783 -5.8 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3842 -5.7 -4.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_71 -5.6 -5.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4597 -5.6 -8.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3630 -5.5 -6.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3253 -5.3 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_77 -5.2 -5.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5176 -5.1 -6.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_64 -5.0 -4.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_5175 -4.9 -9.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3839 -4.9 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4596 -4.9 -10.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4047 -4.8 -4.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_2073 -4.8 -3.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3251 -4.7 -10.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4564 -4.7 -11.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3940 -4.5 -10.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_302 -4.5 -7.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5177 -4.5 -11.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4759 -4.5 -14.5 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3610 -4.2 -5.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_66 -4.2 -10.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_63 -4.2 -7.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5014 -4.1 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4762 -4.1 -4.5 Biotin synthesis protein BioH compare
Pf6N2E2_5527 -4.1 -2.8 Cold shock protein CspC compare
Pf6N2E2_2074 -3.9 -2.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4418 -3.8 -1.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4048 -3.8 -7.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3782 -3.8 -4.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5950 -3.6 -4.8 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3252 -3.5 -9.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5728 -3.5 -5.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3841 -3.5 -6.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3932 -3.4 -5.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5006 -3.4 -9.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4087 -3.4 -10.9 L-asparaginase (EC 3.5.1.1) (from data) conserved
Pf6N2E2_3938 -3.3 -14.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_4764 -3.1 -7.1 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2465 -3.0 -8.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4763 -3.0 -11.7 Biotin synthesis protein BioC compare
Pf6N2E2_4761 -3.0 -12.4 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5258 -2.9 -7.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2869 -2.8 -2.0 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_4631 -2.8 -9.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_5257 -2.8 -10.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_5103 -2.7 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2885 -2.7 -7.3 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3170 -2.7 -7.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5156 -2.6 -2.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4797 -2.6 -2.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3264 -2.6 -3.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4187 -2.5 -4.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2899 -2.5 -6.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_5676 -2.5 -4.0 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_2219 -2.5 -2.3 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4638 -2.3 -2.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5579 -2.3 -6.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3984 -2.3 -10.0 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3460 -2.3 -2.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4601 -2.3 -2.8 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_4416 -2.2 -3.0 Tyrosine recombinase XerC compare
Pf6N2E2_2473 -2.2 -1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_4803 -2.2 -2.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3825 -2.1 -5.6 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3826 -2.1 -5.1 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3346 -2.0 -5.4 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_4987 -2.0 -1.7 MaoC-like domain protein compare
Pf6N2E2_1136 -2.0 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_2588 -2.0 -4.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_1717 -1.9 -9.0 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_3533 -1.9 -4.4 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_3349 -1.9 -2.6 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4009 -1.9 -8.5 GGDEF domain protein compare
Pf6N2E2_5316 -1.9 -2.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5242 -1.9 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2753 -1.9 -2.9 HtrA protease/chaperone protein compare
Pf6N2E2_623 -1.9 -1.7 FIG00954674: hypothetical protein compare
Pf6N2E2_3941 -1.9 -4.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3258 -1.9 -4.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2261 -1.8 -6.3 VacJ-like lipoprotein precursor compare
Pf6N2E2_50 -1.8 -6.7 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_1396 -1.7 -1.9 ABC transporter, ATP-binding protein compare
Pf6N2E2_4276 -1.7 -4.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5243 -1.7 -1.4 hypothetical protein compare
Pf6N2E2_5564 -1.6 -9.6 Membrane protein glpM compare
Pf6N2E2_5766 -1.6 -1.9 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_70 -1.6 -3.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_89 -1.6 -1.7 hypothetical protein compare
Pf6N2E2_3027 -1.5 -1.7 Baseplate assembly protein V compare
Pf6N2E2_760 -1.5 -9.1 Na+/H+ antiporter NhaB compare
Pf6N2E2_2574 -1.5 -1.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_4708 -1.5 -3.1 hypothetical protein compare
Pf6N2E2_4417 -1.5 -3.2 Protein of unknown function DUF484 compare
Pf6N2E2_5740 -1.5 -5.2 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_51 -1.4 -6.3 hypothetical protein compare
Pf6N2E2_4086 -1.4 -10.1 sodium/alanine transporter conserved
Pf6N2E2_4084 -1.4 -5.0 Transcriptional regulator compare
Pf6N2E2_1870 -1.4 -2.4 hypothetical protein compare
Pf6N2E2_2586 -1.4 -1.3 Hpt domain protein compare
Pf6N2E2_3534 -1.4 -2.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2068 -1.3 -6.6 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_5741 -1.3 -5.0 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_4205 -1.3 -3.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2513 -1.3 -2.5 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2518 -1.3 -1.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_2675 -1.3 -1.1 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3134 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_5738 -1.3 -6.1 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_5943 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_1606 -1.2 -4.9 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_5555 -1.2 -1.1 Cold shock protein CspA compare
Pf6N2E2_2218 -1.2 -3.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5178 -1.2 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3537 -1.2 -3.8 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_1163 -1.2 -3.6 hypothetical protein compare
Pf6N2E2_3060 -1.2 -2.0 Outer membrane protein H precursor compare
Pf6N2E2_4399 -1.2 -5.5 GGDEF domain/EAL domain protein compare
Pf6N2E2_2217 -1.2 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2311 -1.2 -5.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1932 -1.1 -4.0 Transcriptional regulator, IclR family compare
Pf6N2E2_3762 -1.1 -4.5 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_216 -1.1 -3.2 Copper-sensing two-component system response regulator CpxR compare
Pf6N2E2_127 -1.1 -1.9 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_2065 -1.1 -1.8 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_5745 -1.1 -3.9 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Pf6N2E2_367 -1.1 -1.7 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_5666 -1.1 -5.4 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5746 -1.1 -2.5 Cobalamin synthase compare
Pf6N2E2_3908 -1.1 -4.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5252 -1.1 -1.8 FIG00956396: hypothetical protein compare
Pf6N2E2_5775 -1.1 -3.2 FOG: TPR repeat, SEL1 subfamily compare
Pf6N2E2_3206 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_2186 -1.0 -4.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_4071 -1.0 -2.9 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2428 -1.0 -2.1 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_4159 -1.0 -2.8 Cytochrome c4 compare
Pf6N2E2_5338 -1.0 -5.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3899 -1.0 -4.7 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_5677 -1.0 -1.1 Carbon storage regulator compare
Pf6N2E2_5646 -1.0 -1.1 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_3535 -1.0 -3.1 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf6N2E2_3340 -1.0 -6.5 Fructose repressor FruR, LacI family compare
Pf6N2E2_3532 -1.0 -4.6 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_6140 -1.0 -0.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_204 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_1534 -1.0 -1.3 Probable transmembrane protein compare
Pf6N2E2_2999 -1.0 -2.2 probable tail fiber assembly protein compare
Pf6N2E2_5743 -0.9 -3.4 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_3443 -0.9 -3.0 Sulfate permease compare
Pf6N2E2_2893 -0.9 -4.1 hypothetical protein compare
Pf6N2E2_1147 -0.9 -1.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_5339 -0.9 -4.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_600 -0.9 -2.3 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_5742 -0.9 -3.9 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_1652 -0.9 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_3198 -0.9 -1.6 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2510 -0.9 -2.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4083 -0.9 -2.5 hypothetical protein compare
Pf6N2E2_1303 -0.9 -1.9 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_1605 -0.9 -4.2 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) compare
Pf6N2E2_4362 -0.9 -2.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2274 -0.9 -2.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2527 -0.9 -2.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2111 -0.9 -2.5 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_5536 -0.9 -1.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_928 -0.9 -2.1 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_4824 -0.9 -2.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_2864 -0.9 -1.9 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_5331 -0.9 -4.0 ATPase, AFG1 family compare
Pf6N2E2_234 -0.9 -2.6 FIG00454312: hypothetical protein compare
Pf6N2E2_4454 -0.9 -3.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3300 -0.9 -1.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2088 -0.9 -1.5 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2889 -0.9 -5.0 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_2413 -0.9 -1.6 FIG074102: hypothetical protein compare
Pf6N2E2_3725 -0.9 -2.1 FIG085779: Lipoprotein compare
Pf6N2E2_3351 -0.9 -2.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2060 -0.9 -5.8 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1523 -0.9 -3.3 Universal stress protein family 5 compare
Pf6N2E2_5667 -0.9 -4.4 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5494 -0.9 -2.3 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2253 -0.9 -3.0 hypothetical protein compare
Pf6N2E2_5150 -0.9 -3.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5510 -0.9 -1.5 FIG00955324: hypothetical protein compare
Pf6N2E2_2264 -0.8 -2.4 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_65 -0.8 -2.5 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf6N2E2_4636 -0.8 -4.0 periplasmic binding protein, putative compare
Pf6N2E2_962 -0.8 -1.6 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_1718 -0.8 -1.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_4146 -0.8 -1.1 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_5190 -0.8 -5.0 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_4049 -0.8 -4.1 Glycine cleavage system transcriptional activator compare
Pf6N2E2_6100 -0.8 -1.8 tRNA-Val-TAC compare
Pf6N2E2_922 -0.8 -2.3 FIG00794167: hypothetical protein compare
Pf6N2E2_2897 -0.8 -4.5 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_2605 -0.8 -2.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Asparagine in Pseudomonas fluorescens FW300-N2E2

For nitrogen source L-Asparagine across organisms