Experiment setAIT072 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3060 -5.5 -3.5 Outer membrane protein H precursor compare
Pf6N2E2_4597 -4.9 -5.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_50 -4.8 -4.7 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3842 -4.7 -3.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4596 -4.5 -6.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3751 -4.4 -8.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5177 -4.3 -7.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5006 -4.3 -5.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2588 -4.3 -2.9 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_4826 -4.2 -5.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4071 -4.1 -4.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3248 -4.1 -4.9 Probable transmembrane protein compare
Pf6N2E2_77 -4.1 -4.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3610 -4.1 -5.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5175 -4.0 -6.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_658 -4.0 -9.7 sensor histidine kinase compare
Pf6N2E2_3783 -4.0 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_64 -4.0 -3.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4353 -4.0 -5.4 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4077 -3.9 -2.5 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3940 -3.9 -7.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4564 -3.9 -9.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2258 -3.9 -8.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2281 -3.8 -3.0 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3252 -3.8 -5.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5176 -3.8 -6.3 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3826 -3.8 -4.5 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4825 -3.7 -7.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3253 -3.6 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3782 -3.6 -2.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4047 -3.6 -4.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_1187 -3.5 -7.8 Probable nikkomycin biosynthesis protein, carboxylase compare
Pf6N2E2_5150 -3.5 -4.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3752 -3.4 -16.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_66 -3.3 -7.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4279 -3.3 -10.5 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4678 -3.3 -1.2 hypothetical protein compare
Pf6N2E2_3072 -3.3 -7.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_5723 -3.2 -8.1 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_71 -3.2 -5.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4624 -3.2 -1.2 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4372 -3.2 -3.1 FIG00460773: hypothetical protein compare
Pf6N2E2_5557 -3.2 -10.0 L-serine ammonia-lyase (EC 4.3.1.17) (from data) conserved
Pf6N2E2_4048 -3.1 -7.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5160 -3.1 -1.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2885 -3.1 -5.2 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3251 -3.1 -8.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3461 -3.0 -1.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3839 -3.0 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5527 -3.0 -2.0 Cold shock protein CspC compare
Pf6N2E2_3264 -2.8 -2.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3480 -2.8 -1.5 Transcriptional regulator, ArsR family compare
Pf6N2E2_4803 -2.8 -1.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2852 -2.8 -9.6 GGDEF domain/EAL domain protein compare
Pf6N2E2_4057 -2.8 -1.0 lipoprotein, putative compare
Pf6N2E2_623 -2.8 -1.4 FIG00954674: hypothetical protein compare
Pf6N2E2_464 -2.7 -2.6 Sensory histidine kinase QseC compare
Pf6N2E2_4278 -2.7 -9.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3825 -2.7 -3.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_1188 -2.6 -5.1 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_5252 -2.6 -2.2 FIG00956396: hypothetical protein compare
Pf6N2E2_1186 -2.5 -5.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_4360 -2.5 -9.6 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_4579 -2.5 -2.3 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4987 -2.5 -1.3 MaoC-like domain protein compare
Pf6N2E2_3257 -2.5 -2.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5579 -2.5 -7.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4743 -2.5 -0.9 hypothetical protein compare
Pf6N2E2_5219 -2.4 -7.5 FIG140336: TPR domain protein compare
Pf6N2E2_3258 -2.4 -2.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4394 -2.4 -6.2 Putrescine utilization regulator compare
Pf6N2E2_4277 -2.3 -7.9 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3170 -2.3 -8.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_1870 -2.3 -2.2 hypothetical protein compare
Pf6N2E2_3942 -2.3 -7.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5780 -2.3 -7.9 Periplasmic protease compare
Pf6N2E2_4759 -2.3 -10.5 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5666 -2.3 -8.2 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4399 -2.3 -4.9 GGDEF domain/EAL domain protein compare
Pf6N2E2_5669 -2.3 -6.1 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_1189 -2.3 -5.0 Thioredoxin reductase (EC 1.8.1.9) compare
Pf6N2E2_1056 -2.3 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1758 -2.3 -1.4 Transcriptional regulator, MarR family compare
Pf6N2E2_178 -2.2 -1.1 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_1169 -2.2 -2.3 TnpR protein compare
Pf6N2E2_288 -2.2 -2.1 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3260 -2.2 -2.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_802 -2.2 -7.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_133 -2.2 -2.7 hypothetical protein compare
Pf6N2E2_5605 -2.2 -2.9 FxsA protein compare
Pf6N2E2_3373 -2.2 -1.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3844 -2.2 -2.2 hypothetical protein compare
Pf6N2E2_4636 -2.2 -5.9 periplasmic binding protein, putative compare
Pf6N2E2_2526 -2.1 -5.1 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_4453 -2.1 -11.4 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4810 -2.1 -6.0 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_3460 -2.1 -1.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2261 -2.1 -4.5 VacJ-like lipoprotein precursor compare
Pf6N2E2_4187 -2.1 -2.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_525 -2.0 -5.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5972 -2.0 -2.4 hypothetical protein compare
Pf6N2E2_3835 -2.0 -3.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4763 -2.0 -6.9 Biotin synthesis protein BioC compare
Pf6N2E2_3984 -2.0 -7.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4761 -2.0 -8.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4584 -2.0 -2.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3677 -2.0 -9.2 Sensory box/GGDEF family protein compare
Pf6N2E2_1972 -2.0 -1.6 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_4797 -2.0 -1.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_127 -1.9 -1.5 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_1215 -1.9 -2.7 probable membrane protein YPO2362 compare
Pf6N2E2_4352 -1.9 -1.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2286 -1.9 -1.9 FIG00953287: hypothetical protein compare
Pf6N2E2_4631 -1.9 -7.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_1190 -1.9 -6.1 Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase compare
Pf6N2E2_4773 -1.9 -1.0 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_718 -1.9 -3.8 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_3763 -1.9 -2.1 hypothetical protein compare
Pf6N2E2_3554 -1.8 -6.1 GCN5-related N-acetyltransferase compare
Pf6N2E2_2186 -1.8 -4.3 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_5156 -1.8 -1.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2384 -1.8 -3.6 CmpX compare
Pf6N2E2_4993 -1.8 -2.0 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_5766 -1.8 -1.2 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_5468 -1.7 -2.7 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_3841 -1.7 -2.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5560 -1.7 -2.1 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_477 -1.7 -4.3 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_4369 -1.7 -1.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5392 -1.7 -2.8 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_4754 -1.7 -8.1 Protein rarD compare
Pf6N2E2_4092 -1.7 -2.1 FIG00954395: hypothetical protein compare
Pf6N2E2_2188 -1.7 -2.5 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_4764 -1.7 -4.2 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_463 -1.7 -5.4 Transcriptional regulatory protein RstA compare
Pf6N2E2_5178 -1.7 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3738 -1.7 -2.9 General secretion pathway protein L compare
Pf6N2E2_3100 -1.7 -2.7 FIG00953063: hypothetical protein compare
Pf6N2E2_5524 -1.6 -8.2 Outer membrane porin, OprD family compare
Pf6N2E2_6090 -1.6 -1.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_6100 -1.6 -1.9 tRNA-Val-TAC compare
Pf6N2E2_4762 -1.6 -1.6 Biotin synthesis protein BioH compare
Pf6N2E2_1191 -1.6 -6.4 Thiaminase II (EC 3.5.99.2) compare
Pf6N2E2_3571 -1.6 -3.9 Urease accessory protein UreF compare
Pf6N2E2_1450 -1.6 -1.7 FIG00960438: hypothetical protein compare
Pf6N2E2_1673 -1.6 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_3941 -1.6 -1.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3684 -1.6 -7.0 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter compare
Pf6N2E2_5520 -1.6 -4.8 Sensory box histidine kinase compare
Pf6N2E2_5989 -1.6 -9.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) conserved
Pf6N2E2_3206 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_4531 -1.6 -1.1 hypothetical protein compare
Pf6N2E2_4083 -1.6 -3.7 hypothetical protein compare
Pf6N2E2_2428 -1.6 -1.4 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_2845 -1.6 -5.9 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_737 -1.6 -1.1 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_5950 -1.5 -2.5 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3270 -1.5 -2.3 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3074 -1.5 -1.3 FIG00960973: hypothetical protein compare
Pf6N2E2_1347 -1.5 -2.9 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_2790 -1.5 -2.6 Helix-turn-helix motif compare
Pf6N2E2_3630 -1.5 -3.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_6022 -1.5 -2.1 StbE replicon stabilization toxin compare
Pf6N2E2_2440 -1.5 -0.9 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_6140 -1.5 -0.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2284 -1.5 -2.1 Cell division inhibitor-related protein compare
Pf6N2E2_4517 -1.5 -2.8 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_2473 -1.5 -0.9 Major outer membrane lipoprotein I compare
Pf6N2E2_2693 -1.5 -1.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4163 -1.5 -3.0 FIG00953549: hypothetical protein compare
Pf6N2E2_5555 -1.5 -0.9 Cold shock protein CspA compare
Pf6N2E2_4276 -1.5 -3.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_6070 -1.5 -2.6 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_4412 -1.5 -6.2 Ammonium transporter conserved
Pf6N2E2_3505 -1.5 -1.3 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4838 -1.5 -5.4 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_3568 -1.4 -2.2 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_1391 -1.4 -2.5 DNA-binding response regulator, LuxR family compare
Pf6N2E2_2074 -1.4 -1.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4515 -1.4 -6.0 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf6N2E2_5986 -1.4 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2675 -1.4 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5919 -1.4 -2.2 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_441 -1.4 -2.1 FIG00958773: hypothetical protein compare
Pf6N2E2_660 -1.4 -1.9 hypothetical protein compare
Pf6N2E2_4121 -1.4 -1.5 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_3685 -1.4 -7.7 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) compare
Pf6N2E2_3938 -1.4 -7.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_4809 -1.4 -7.8 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_51 -1.4 -5.0 hypothetical protein compare
Pf6N2E2_4416 -1.4 -1.9 Tyrosine recombinase XerC compare
Pf6N2E2_760 -1.4 -6.3 Na+/H+ antiporter NhaB compare
Pf6N2E2_613 -1.4 -1.2 lipoprotein, putative compare
Pf6N2E2_5001 -1.4 -1.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3586 -1.4 -4.3 NAD synthetase (EC 6.3.1.5) compare
Pf6N2E2_3039 -1.4 -4.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5243 -1.4 -1.5 hypothetical protein compare
Pf6N2E2_424 -1.4 -4.0 Decarboxylase family protein compare
Pf6N2E2_5103 -1.3 -0.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_136 -1.3 -2.6 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare


Specific Phenotypes

For 33 genes in this experiment

For nitrogen source L-Serine in Pseudomonas fluorescens FW300-N2E2

For nitrogen source L-Serine across organisms