Experiment setAIT070 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Aspartic Acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4597 -5.9 -4.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_71 -5.6 -3.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_64 -5.5 -3.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3253 -5.5 -3.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3842 -5.3 -3.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4826 -5.3 -5.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3630 -5.2 -5.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3783 -5.1 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4825 -5.0 -6.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4596 -4.9 -7.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3610 -4.8 -5.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_77 -4.7 -4.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4047 -4.6 -3.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3251 -4.6 -8.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4564 -4.6 -9.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5006 -4.6 -7.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3060 -4.6 -3.2 Outer membrane protein H precursor compare
Pf6N2E2_5175 -4.5 -8.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3940 -4.5 -8.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5176 -4.5 -6.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3839 -4.5 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3252 -4.4 -6.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2248 -4.3 -12.6 Aspartate racemase compare
Pf6N2E2_3841 -4.3 -4.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5177 -4.2 -10.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4759 -4.2 -12.4 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_2073 -4.2 -4.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4048 -4.0 -7.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_302 -4.0 -6.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4206 -3.9 -2.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5014 -3.9 -1.7 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_760 -3.9 -11.3 Na+/H+ antiporter NhaB compare
Pf6N2E2_66 -3.8 -8.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3782 -3.8 -3.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3461 -3.7 -2.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5527 -3.6 -2.5 Cold shock protein CspC compare
Pf6N2E2_2074 -3.6 -2.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3932 -3.5 -4.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5258 -3.5 -8.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2465 -3.4 -6.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3328 -3.2 -2.9 transcriptional regulator compare
Pf6N2E2_3762 -3.1 -7.2 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_4187 -3.1 -3.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5579 -3.0 -8.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2646 -2.8 -2.4 FIG00953416: hypothetical protein compare
Pf6N2E2_63 -2.8 -5.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3248 -2.8 -5.0 Probable transmembrane protein compare
Pf6N2E2_1136 -2.8 -3.2 Transcriptional regulator, TetR family compare
Pf6N2E2_5646 -2.8 -2.4 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5950 -2.7 -4.1 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3938 -2.7 -12.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3170 -2.7 -9.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5508 -2.7 -2.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_659 -2.7 -2.3 Transcriptional regulatory protein ompR compare
Pf6N2E2_5257 -2.6 -7.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3282 -2.6 -1.8 FIG005080: Possible exported protein compare
Pf6N2E2_3826 -2.6 -5.8 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3661 -2.5 -5.0 hypothetical protein compare
Pf6N2E2_5103 -2.5 -1.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3984 -2.4 -11.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5001 -2.4 -2.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4761 -2.4 -9.4 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2574 -2.4 -2.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_2513 -2.4 -4.7 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2549 -2.3 -1.8 hypothetical protein compare
Pf6N2E2_4423 -2.3 -2.4 FIG00953342: hypothetical protein compare
Pf6N2E2_4764 -2.2 -5.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4417 -2.2 -3.0 Protein of unknown function DUF484 compare
Pf6N2E2_6090 -2.2 -1.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_5178 -2.2 -2.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5728 -2.0 -3.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4009 -2.0 -7.4 GGDEF domain protein compare
Pf6N2E2_4773 -2.0 -1.3 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_3024 -2.0 -2.7 Phage tail fibers compare
Pf6N2E2_4601 -2.0 -2.0 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_613 -2.0 -1.7 lipoprotein, putative compare
Pf6N2E2_4797 -2.0 -1.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5972 -1.9 -3.0 hypothetical protein compare
Pf6N2E2_4418 -1.9 -1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5499 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_5156 -1.9 -2.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5316 -1.9 -2.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2274 -1.9 -4.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4638 -1.9 -2.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_595 -1.9 -2.8 Arsenical resistance operon repressor compare
Pf6N2E2_2010 -1.8 -2.0 hypothetical protein compare
Pf6N2E2_3825 -1.8 -3.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3763 -1.8 -2.4 hypothetical protein compare
Pf6N2E2_2218 -1.8 -3.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_1870 -1.8 -2.5 hypothetical protein compare
Pf6N2E2_579 -1.8 -1.6 FIG00962753: hypothetical protein compare
Pf6N2E2_5555 -1.8 -1.4 Cold shock protein CspA compare
Pf6N2E2_2519 -1.8 -1.5 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5252 -1.8 -1.8 FIG00956396: hypothetical protein compare
Pf6N2E2_50 -1.7 -4.9 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_1545 -1.7 -3.9 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3568 -1.7 -2.8 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_4631 -1.7 -8.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_5320 -1.7 -5.6 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3373 -1.7 -1.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4763 -1.7 -7.1 Biotin synthesis protein BioC compare
Pf6N2E2_3072 -1.7 -8.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_4762 -1.7 -1.5 Biotin synthesis protein BioH compare
Pf6N2E2_6140 -1.7 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_502 -1.7 -3.6 hypothetical protein compare
Pf6N2E2_3039 -1.7 -6.0 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3532 -1.6 -5.3 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_1056 -1.6 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2588 -1.6 -2.7 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_1083 -1.6 -1.7 hypothetical protein compare
Pf6N2E2_5841 -1.6 -1.2 GlcG protein compare
Pf6N2E2_5739 -1.6 -1.3 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3073 -1.5 -7.1 N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17) compare
Pf6N2E2_2277 -1.5 -2.2 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_1512 -1.5 -3.4 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_2518 -1.5 -1.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_605 -1.5 -2.5 FIG002465: BNR repeat protein compare
Pf6N2E2_2885 -1.5 -4.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_737 -1.5 -1.9 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_2217 -1.5 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1972 -1.4 -2.0 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_5321 -1.4 -5.9 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_5190 -1.4 -6.1 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_5242 -1.4 -1.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_819 -1.4 -1.9 Response regulator compare
Pf6N2E2_70 -1.4 -2.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2065 -1.4 -3.0 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_1810 -1.4 -3.2 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_5536 -1.4 -1.3 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3454 -1.4 -2.0 hypothetical protein compare
Pf6N2E2_2402 -1.3 -1.8 hypothetical protein compare
Pf6N2E2_74 -1.3 -2.0 DedD protein compare
Pf6N2E2_3261 -1.3 -2.8 hypothetical protein compare
Pf6N2E2_2514 -1.3 -3.6 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_1443 -1.3 -2.8 putative aldo/keto reductase compare
Pf6N2E2_5806 -1.3 -2.5 hypothetical protein compare
Pf6N2E2_6085 -1.3 -2.1 Aha1 domain superfamily compare
Pf6N2E2_4754 -1.3 -6.8 Protein rarD compare
Pf6N2E2_5319 -1.3 -4.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_2487 -1.3 -0.9 FIG00956090: hypothetical protein compare
Pf6N2E2_2264 -1.3 -2.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3040 -1.3 -4.3 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_4072 -1.3 -3.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5520 -1.3 -4.2 Sensory box histidine kinase compare
Pf6N2E2_3531 -1.3 -4.4 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3183 -1.3 -2.3 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_127 -1.3 -1.3 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_5086 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_3171 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_2499 -1.2 -2.3 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_65 -1.2 -2.8 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf6N2E2_3258 -1.2 -3.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5243 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_2156 -1.2 -1.8 Putative polyketide synthase (Fragment) compare
Pf6N2E2_2314 -1.2 -1.4 VapB protein (antitoxin to VapC) compare
Pf6N2E2_2313 -1.2 -2.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4541 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_3264 -1.2 -2.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5613 -1.2 -2.1 FIG00953674: hypothetical protein compare
Pf6N2E2_37 -1.2 -2.2 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_4372 -1.2 -3.3 FIG00460773: hypothetical protein compare
Pf6N2E2_3027 -1.2 -1.2 Baseplate assembly protein V compare
Pf6N2E2_3901 -1.2 -2.3 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_5746 -1.2 -2.3 Cobalamin synthase compare
Pf6N2E2_5317 -1.2 -6.8 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_2064 -1.1 -2.1 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_1213 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_6095 -1.1 -1.5 tRNA-Asn-GTT compare
Pf6N2E2_5676 -1.1 -1.7 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_1424 -1.1 -1.7 transcriptional regulator, TetR family compare
Pf6N2E2_51 -1.1 -4.2 hypothetical protein compare
Pf6N2E2_5622 -1.1 -1.8 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_4188 -1.1 -1.9 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_4084 -1.1 -3.9 Transcriptional regulator compare
Pf6N2E2_4993 -1.1 -2.0 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2285 -1.1 -1.0 FIG00954079: hypothetical protein compare
Pf6N2E2_2261 -1.1 -4.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_3537 -1.1 -3.2 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_5919 -1.1 -2.3 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_1354 -1.1 -3.1 FIG026291: Hypothetical periplasmic protein compare
Pf6N2E2_4733 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_3062 -1.1 -2.7 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5740 -1.1 -3.6 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_1074 -1.1 -2.4 FIG00953356: hypothetical protein compare
Pf6N2E2_3641 -1.1 -2.4 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_2509 -1.1 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5028 -1.1 -3.4 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) compare
Pf6N2E2_2200 -1.1 -1.1 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_490 -1.1 -1.9 PhaK-like protein compare
Pf6N2E2_5742 -1.1 -3.2 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_2176 -1.1 -1.1 Amidases related to nicotinamidase compare
Pf6N2E2_2481 -1.0 -2.7 Membrane protein, distant similarity to thiosulphate:quinone oxidoreductase DoxD compare
Pf6N2E2_96 -1.0 -3.0 FIG011065: hypothetical protein compare
Pf6N2E2_4083 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_2061 -1.0 -2.8 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_3198 -1.0 -1.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_1404 -1.0 -2.1 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_4476 -1.0 -2.8 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_420 -1.0 -1.4 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_687 -1.0 -2.1 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Aspartic Acid in Pseudomonas fluorescens FW300-N2E2

For nitrogen source L-Aspartic Acid across organisms