Experiment setAIT066 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.5 -5.5 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4353 -5.4 -7.9 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3661 -3.9 -8.2 hypothetical protein compare
Pf6N2E2_3659 -3.7 -6.6 Protein fixF compare
Pf6N2E2_3461 -3.2 -3.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4416 -3.1 -4.5 Tyrosine recombinase XerC compare
Pf6N2E2_3460 -3.0 -2.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4352 -2.8 -4.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4418 -2.3 -1.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3658 -2.3 -7.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3303 -2.1 -6.0 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4204 -2.0 -2.3 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4908 -1.8 -8.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4369 -1.8 -2.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2508 -1.8 -5.8 hypothetical protein compare
Pf6N2E2_5001 -1.8 -2.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2510 -1.7 -5.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_6140 -1.6 -1.4 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3373 -1.6 -4.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3351 -1.5 -4.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3908 -1.5 -6.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3261 -1.5 -4.6 hypothetical protein compare
Pf6N2E2_4187 -1.5 -4.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5727 -1.5 -5.1 FIG00955360: hypothetical protein compare
Pf6N2E2_2675 -1.4 -1.4 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5014 -1.4 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5069 -1.3 -5.3 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2753 -1.3 -2.3 HtrA protease/chaperone protein compare
Pf6N2E2_3792 -1.2 -4.6 Glucans biosynthesis protein G precursor compare
Pf6N2E2_4454 -1.2 -4.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2480 -1.2 -1.9 FIG00957636: hypothetical protein compare
Pf6N2E2_1056 -1.2 -0.8 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3257 -1.2 -3.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2507 -1.2 -5.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2217 -1.2 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2325 -1.2 -4.1 Recombination protein RecR compare
Pf6N2E2_4372 -1.2 -4.7 FIG00460773: hypothetical protein compare
Pf6N2E2_3534 -1.2 -2.6 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2506 -1.2 -9.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4886 -1.2 -8.0 Catalase (EC 1.11.1.6) compare
Pf6N2E2_3607 -1.2 -4.6 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4417 -1.1 -3.2 Protein of unknown function DUF484 compare
Pf6N2E2_5242 -1.1 -1.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4710 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_5430 -1.1 -6.6 Transglycosylase, Slt family compare
Pf6N2E2_3611 -1.1 -1.0 HflC protein compare
Pf6N2E2_4797 -1.1 -1.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2189 -1.1 -4.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2940 -1.1 -5.3 OmpA family protein compare
Pf6N2E2_1040 -1.1 -2.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5133 -1.1 -3.1 FIG00953980: hypothetical protein compare
Pf6N2E2_613 -1.1 -1.6 lipoprotein, putative compare
Pf6N2E2_1534 -1.1 -1.4 Probable transmembrane protein compare
Pf6N2E2_2513 -1.0 -3.3 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4162 -1.0 -2.2 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5527 -1.0 -1.2 Cold shock protein CspC compare
Pf6N2E2_4159 -1.0 -3.1 Cytochrome c4 compare
Pf6N2E2_145 -1.0 -5.9 putative exported protein compare
Pf6N2E2_3828 -1.0 -2.6 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_5508 -1.0 -1.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2503 -0.9 -1.4 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_449 -0.9 -2.8 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_1173 -0.9 -2.4 hypothetical protein compare
Pf6N2E2_1545 -0.9 -3.4 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3085 -0.9 -1.9 FIG00954614: hypothetical protein compare
Pf6N2E2_3505 -0.9 -0.9 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5428 -0.9 -4.5 DNA recombination and repair protein RecO compare
Pf6N2E2_2320 -0.9 -1.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_144 -0.9 -7.1 Uncharacterized protein YtfM precursor compare
Pf6N2E2_178 -0.9 -1.3 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2586 -0.9 -1.4 Hpt domain protein compare
Pf6N2E2_2518 -0.9 -2.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4197 -0.9 -5.8 DNA recombination and repair protein RecF compare
Pf6N2E2_622 -0.9 -2.8 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5068 -0.9 -6.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2311 -0.9 -4.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_440 -0.9 -2.6 FIG00954920: hypothetical protein compare
Pf6N2E2_362 -0.9 -2.7 Dipeptide transport system permease protein dppC compare
Pf6N2E2_4205 -0.8 -2.0 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2106 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_4611 -0.8 -2.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2310 -0.8 -5.4 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3260 -0.8 -3.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2127 -0.8 -2.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2018 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_3258 -0.8 -3.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_1081 -0.8 -1.6 probable membrane protein YPO3302 compare
Pf6N2E2_3666 -0.8 -2.9 InaA protein compare
Pf6N2E2_3841 -0.8 -2.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_384 -0.8 -1.5 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2487 -0.8 -0.8 FIG00956090: hypothetical protein compare
Pf6N2E2_2693 -0.8 -1.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5006 -0.8 -4.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4803 -0.8 -1.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_1391 -0.8 -2.0 DNA-binding response regulator, LuxR family compare
Pf6N2E2_5316 -0.8 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3060 -0.7 -1.6 Outer membrane protein H precursor compare
Pf6N2E2_2746 -0.7 -3.6 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_6164 -0.7 -1.1 tRNA-Val-TAC compare
Pf6N2E2_4889 -0.7 -3.4 Putative transport protein compare
Pf6N2E2_4673 -0.7 -2.6 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_1893 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_2126 -0.7 -3.8 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_6062 -0.7 -4.1 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_3062 -0.7 -2.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4499 -0.7 -1.7 protein of unknown function DUF86 compare
Pf6N2E2_84 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_1424 -0.7 -1.5 transcriptional regulator, TetR family compare
Pf6N2E2_2973 -0.7 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3791 -0.7 -4.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5103 -0.7 -1.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3876 -0.7 -2.0 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5406 -0.7 -1.5 FIG00958224: hypothetical protein compare
Pf6N2E2_1140 -0.7 -2.5 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_5155 -0.7 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2088 -0.7 -0.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_5337 -0.7 -2.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_238 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_5188 -0.7 -3.0 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2473 -0.7 -1.0 Major outer membrane lipoprotein I compare
Pf6N2E2_2371 -0.7 -1.6 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_5536 -0.7 -0.9 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2967 -0.7 -1.2 Cold shock protein CspA compare
Pf6N2E2_4638 -0.7 -1.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2317 -0.7 -2.9 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5252 -0.7 -1.1 FIG00956396: hypothetical protein compare
Pf6N2E2_2012 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_5339 -0.7 -3.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2536 -0.7 -0.9 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_5223 -0.7 -2.1 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_3264 -0.7 -1.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2188 -0.6 -2.8 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_4579 -0.6 -1.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_5342 -0.6 -1.3 21 kDa hemolysin precursor compare
Pf6N2E2_1099 -0.6 -1.5 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_623 -0.6 -1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_33 -0.6 -1.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1147 -0.6 -1.7 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_1784 -0.6 -1.9 Methyl-accepting chemotaxis protein compare
Pf6N2E2_3529 -0.6 -1.4 Toxin A compare
Pf6N2E2_142 -0.6 -2.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_700 -0.6 -1.6 Heme d1 biosynthesis protein NirL compare
Pf6N2E2_3024 -0.6 -1.8 Phage tail fibers compare
Pf6N2E2_712 -0.6 -1.9 hypothetical protein compare
Pf6N2E2_3667 -0.6 -0.7 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_6058 -0.6 -2.7 FIG139976: hypothetical protein compare
Pf6N2E2_4063 -0.6 -2.6 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf6N2E2_1870 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_2285 -0.6 -0.7 FIG00954079: hypothetical protein compare
Pf6N2E2_648 -0.6 -1.2 General secretion pathway protein K compare
Pf6N2E2_43 -0.6 -2.4 Histidine permease YuiF compare
Pf6N2E2_3864 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_5338 -0.6 -3.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4996 -0.6 -2.0 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_5494 -0.6 -2.2 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_1352 -0.6 -1.2 Cation transport ATPase compare
Pf6N2E2_2934 -0.6 -2.1 lipoprotein, putative compare
Pf6N2E2_3941 -0.6 -1.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2261 -0.6 -3.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_2472 -0.6 -2.4 hypothetical protein compare
Pf6N2E2_2181 -0.6 -0.6 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4047 -0.6 -2.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5320 -0.6 -3.8 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_4071 -0.6 -2.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1776 -0.6 -1.6 Chemotaxis protein CheD compare
Pf6N2E2_4206 -0.6 -0.8 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4273 -0.6 -2.7 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5633 -0.6 -4.5 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2870 -0.5 -1.8 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_5476 -0.5 -1.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_1606 -0.5 -2.5 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_1985 -0.5 -3.1 Type IV secretory pathway, VirD4 components compare
Pf6N2E2_1932 -0.5 -2.5 Transcriptional regulator, IclR family compare
Pf6N2E2_241 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_1656 -0.5 -1.0 hypothetical protein compare
Pf6N2E2_165 -0.5 -1.8 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_1317 -0.5 -1.9 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_731 -0.5 -2.0 Respiratory nitrate reductase delta chain (EC 1.7.99.4) compare
Pf6N2E2_4963 -0.5 -0.9 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_64 -0.5 -1.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_5150 -0.5 -2.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2386 -0.5 -1.9 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_4615 -0.5 -0.9 type IV pili signal transduction protein PilI compare
Pf6N2E2_4165 -0.5 -2.4 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf6N2E2_3997 -0.5 -2.9 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_2176 -0.5 -1.1 Amidases related to nicotinamidase compare
Pf6N2E2_447 -0.5 -2.2 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_3603 -0.5 -2.4 FIG003573: hypothetical protein compare
Pf6N2E2_3370 -0.5 -3.5 DNA repair protein RecN compare
Pf6N2E2_5845 -0.5 -3.0 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2708 -0.5 -2.3 Lactam utilization protein LamB compare
Pf6N2E2_3982 -0.5 -0.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_3521 -0.5 -3.1 Sensor histidine kinase/response regulator compare
Pf6N2E2_375 -0.5 -1.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5944 -0.5 -2.3 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_1670 -0.5 -1.8 conserved membrane protein compare
Pf6N2E2_4168 -0.5 -2.6 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_4943 -0.5 -1.5 PspA/IM30 family protein compare
Pf6N2E2_421 -0.5 -1.7 Methyl-accepting chemotaxis protein compare
Pf6N2E2_2864 -0.5 -0.7 Gluconokinase (EC 2.7.1.12) compare


Specific Phenotypes

For 1 genes in this experiment