Experiment setAIT065 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 24 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.0 -3.8 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3661 -4.2 -7.5 hypothetical protein compare
Pf6N2E2_4353 -4.0 -8.4 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4352 -3.6 -4.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3659 -3.6 -6.5 Protein fixF compare
Pf6N2E2_2219 -3.3 -3.1 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4416 -3.2 -4.7 Tyrosine recombinase XerC compare
Pf6N2E2_3941 -2.9 -3.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3303 -2.7 -6.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4908 -2.5 -7.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4187 -2.5 -5.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5316 -2.4 -3.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3658 -2.3 -7.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4153 -2.3 -2.7 Sensory box histidine kinase compare
Pf6N2E2_3461 -2.2 -2.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2473 -2.2 -2.1 Major outer membrane lipoprotein I compare
Pf6N2E2_4162 -2.1 -3.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2217 -2.1 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2181 -1.8 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4369 -1.6 -2.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2753 -1.5 -3.2 HtrA protease/chaperone protein compare
Pf6N2E2_3607 -1.5 -7.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5150 -1.5 -4.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2508 -1.4 -3.5 hypothetical protein compare
Pf6N2E2_4579 -1.4 -2.4 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4624 -1.4 -1.4 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_3351 -1.4 -4.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5001 -1.3 -2.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3460 -1.3 -2.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4638 -1.3 -3.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4454 -1.3 -4.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5261 -1.3 -1.5 FIG00956983: hypothetical protein compare
Pf6N2E2_2371 -1.3 -2.2 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_2311 -1.3 -6.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2126 -1.3 -4.8 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3908 -1.3 -5.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2507 -1.2 -6.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3792 -1.2 -5.2 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5155 -1.2 -3.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2325 -1.1 -4.8 Recombination protein RecR compare
Pf6N2E2_3060 -1.1 -3.1 Outer membrane protein H precursor compare
Pf6N2E2_178 -1.1 -1.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5727 -1.1 -4.7 FIG00955360: hypothetical protein compare
Pf6N2E2_5069 -1.1 -4.9 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2313 -1.1 -2.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3666 -1.1 -3.6 InaA protein compare
Pf6N2E2_5527 -1.1 -1.3 Cold shock protein CspC compare
Pf6N2E2_2320 -1.1 -3.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5103 -1.1 -1.2 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4969 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_2127 -1.0 -3.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4886 -1.0 -6.9 Catalase (EC 1.11.1.6) compare
Pf6N2E2_1676 -1.0 -1.5 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_4611 -1.0 -2.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_552 -1.0 -1.9 Uncharacterized protein ImpF compare
Pf6N2E2_4556 -0.9 -2.6 FIG00953078: hypothetical protein compare
Pf6N2E2_4594 -0.9 -2.9 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_5705 -0.9 -1.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_687 -0.9 -2.0 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_5068 -0.9 -6.3 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2795 -0.9 -1.7 putative exported protein compare
Pf6N2E2_1774 -0.9 -1.1 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_5014 -0.9 -1.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5406 -0.9 -2.2 FIG00958224: hypothetical protein compare
Pf6N2E2_3791 -0.9 -5.2 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_288 -0.9 -1.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4987 -0.9 -1.2 MaoC-like domain protein compare
Pf6N2E2_1545 -0.9 -2.7 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_855 -0.9 -1.9 Transcriptional regulator, IclR family compare
Pf6N2E2_5972 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_2318 -0.9 -5.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_1603 -0.9 -3.0 hypothetical protein compare
Pf6N2E2_2506 -0.9 -6.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_144 -0.9 -7.0 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3841 -0.9 -4.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4706 -0.8 -1.9 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_74 -0.8 -2.2 DedD protein compare
Pf6N2E2_2870 -0.8 -2.5 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_4743 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_5049 -0.8 -1.6 acetyltransferase, GNAT family compare
Pf6N2E2_3260 -0.8 -3.0 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_1912 -0.8 -3.0 hypothetical protein compare
Pf6N2E2_4916 -0.8 -3.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5252 -0.8 -1.5 FIG00956396: hypothetical protein compare
Pf6N2E2_3876 -0.8 -2.8 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_971 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_5425 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_5338 -0.8 -4.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_1699 -0.8 -2.4 FIG00955832: hypothetical protein compare
Pf6N2E2_2574 -0.8 -1.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_145 -0.8 -4.7 putative exported protein compare
Pf6N2E2_2940 -0.8 -4.0 OmpA family protein compare
Pf6N2E2_384 -0.8 -2.8 Glycine cleavage system transcriptional activator compare
Pf6N2E2_1371 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_5430 -0.8 -5.0 Transglycosylase, Slt family compare
Pf6N2E2_1983 -0.8 -2.7 hypothetical protein compare
Pf6N2E2_4372 -0.8 -3.1 FIG00460773: hypothetical protein compare
Pf6N2E2_2756 -0.8 -3.5 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4797 -0.8 -1.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_445 -0.8 -3.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_953 -0.8 -2.0 FIG00958851: hypothetical protein compare
Pf6N2E2_5739 -0.8 -0.7 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_6058 -0.8 -3.5 FIG139976: hypothetical protein compare
Pf6N2E2_5156 -0.7 -1.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2465 -0.7 -3.9 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4464 -0.7 -2.0 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_4071 -0.7 -2.8 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3373 -0.7 -2.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_43 -0.7 -3.3 Histidine permease YuiF compare
Pf6N2E2_2880 -0.7 -2.3 FIG00959696: hypothetical protein compare
Pf6N2E2_2128 -0.7 -3.4 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_5428 -0.7 -3.5 DNA recombination and repair protein RecO compare
Pf6N2E2_746 -0.7 -0.9 FIG00958097: hypothetical protein compare
Pf6N2E2_3264 -0.7 -1.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_968 -0.7 -2.7 FIG00962395: hypothetical protein compare
Pf6N2E2_841 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_2388 -0.7 -2.7 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_3100 -0.7 -1.5 FIG00953063: hypothetical protein compare
Pf6N2E2_238 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_2189 -0.7 -2.9 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3313 -0.7 -2.6 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf6N2E2_1917 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_4197 -0.7 -4.1 DNA recombination and repair protein RecF compare
Pf6N2E2_3611 -0.7 -0.7 HflC protein compare
Pf6N2E2_2340 -0.7 -2.9 Transcriptional regulator, GntR family compare
Pf6N2E2_6064 -0.7 -3.2 2-methylaconitate isomerase compare
Pf6N2E2_624 -0.7 -3.2 hypothetical protein PA3071 compare
Pf6N2E2_698 -0.6 -1.4 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_3252 -0.6 -3.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5623 -0.6 -2.1 YciL protein compare
Pf6N2E2_5869 -0.6 -1.7 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_1147 -0.6 -1.1 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_441 -0.6 -1.4 FIG00958773: hypothetical protein compare
Pf6N2E2_5219 -0.6 -3.7 FIG140336: TPR domain protein compare
Pf6N2E2_2310 -0.6 -4.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5086 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_5130 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_4181 -0.6 -0.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_3656 -0.6 -2.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_3725 -0.6 -1.4 FIG085779: Lipoprotein compare
Pf6N2E2_718 -0.6 -1.6 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_1056 -0.6 -0.6 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_342 -0.6 -1.1 DNA-binding response regulator compare
Pf6N2E2_3443 -0.6 -1.9 Sulfate permease compare
Pf6N2E2_728 -0.6 -2.0 Nitrate/nitrite transporter compare
Pf6N2E2_2564 -0.6 -3.0 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_4620 -0.6 -2.4 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Pf6N2E2_2317 -0.6 -2.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_1352 -0.6 -1.6 Cation transport ATPase compare
Pf6N2E2_4216 -0.6 -2.4 Transcriptional regulator of glmS gene, DeoR family compare
Pf6N2E2_1932 -0.6 -2.3 Transcriptional regulator, IclR family compare
Pf6N2E2_2708 -0.6 -2.9 Lactam utilization protein LamB compare
Pf6N2E2_5536 -0.6 -0.8 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4276 -0.6 -2.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2292 -0.6 -1.7 Universal stress protein family COG0589 compare
Pf6N2E2_33 -0.6 -1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1089 -0.6 -1.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_3027 -0.6 -1.0 Baseplate assembly protein V compare
Pf6N2E2_5632 -0.6 -1.8 Aromatic amino acid transport protein AroP compare
Pf6N2E2_4601 -0.6 -1.0 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2071 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_2706 -0.6 -1.4 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_768 -0.6 -2.4 Fap amyloid fibril minor component compare
Pf6N2E2_5339 -0.6 -2.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_1462 -0.6 -2.2 Nicotinamidase/isochorismatase family protein compare
Pf6N2E2_3255 -0.6 -1.7 YrbA protein compare
Pf6N2E2_2588 -0.6 -1.7 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_3014 -0.6 -1.1 P2-like prophage tail protein X compare
Pf6N2E2_5411 -0.6 -2.2 FIG00955494: hypothetical protein compare
Pf6N2E2_1065 -0.6 -1.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2065 -0.6 -1.6 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_2124 -0.6 -1.0 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2139 -0.6 -1.4 Paraquat-inducible protein A compare
Pf6N2E2_3794 -0.6 -3.4 Proline iminopeptidase (EC 3.4.11.5) compare
Pf6N2E2_4205 -0.6 -2.0 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1943 -0.6 -2.8 Coenzyme PQQ synthesis protein A compare
Pf6N2E2_447 -0.5 -2.7 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_1199 -0.5 -1.8 hypothetical protein compare
Pf6N2E2_2509 -0.5 -1.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3793 -0.5 -3.0 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Pf6N2E2_5453 -0.5 -2.5 hypothetical protein compare
Pf6N2E2_2967 -0.5 -1.0 Cold shock protein CspA compare
Pf6N2E2_3664 -0.5 -3.3 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_5633 -0.5 -4.3 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2810 -0.5 -1.7 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf6N2E2_4206 -0.5 -0.6 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4607 -0.5 -2.4 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_1339 -0.5 -1.1 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_639 -0.5 -1.6 FIG01285020: hypothetical protein compare
Pf6N2E2_5928 -0.5 -3.4 ABC-type multidrug transport system, permease component compare
Pf6N2E2_1694 -0.5 -0.9 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1701 -0.5 -1.5 ABC transporter ATP-binding protein compare
Pf6N2E2_2905 -0.5 -1.7 CoA transferase, CAIB/BAIF family compare
Pf6N2E2_1987 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_3261 -0.5 -2.1 hypothetical protein compare
Pf6N2E2_3665 -0.5 -0.6 serine/threonine protein kinase compare
Pf6N2E2_3839 -0.5 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2474 -0.5 -3.3 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5510 -0.5 -1.4 FIG00955324: hypothetical protein compare
Pf6N2E2_3742 -0.5 -1.9 General secretion pathway protein H compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments