Experiment setAIT065 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 24 hours

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_2413 +1.2 3.8 FIG074102: hypothetical protein compare
Pf6N2E2_5720 +1.1 9.2 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2912 +1.1 2.8 FIG00954094: hypothetical protein compare
Pf6N2E2_2487 +1.0 1.6 FIG00956090: hypothetical protein compare
Pf6N2E2_5766 +0.9 2.3 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_1325 +0.9 2.4 FIG00954773: hypothetical protein compare
Pf6N2E2_1981 +0.9 4.9 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5794 +0.9 1.7 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2480 +0.8 2.1 FIG00957636: hypothetical protein compare
Pf6N2E2_5990 +0.8 1.6 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_3021 +0.8 1.6 hypothetical protein compare
Pf6N2E2_799 +0.8 1.8 hypothetical protein compare
Pf6N2E2_3282 +0.7 1.4 FIG005080: Possible exported protein compare
Pf6N2E2_2200 +0.7 1.5 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_4747 +0.7 2.1 Transmembrane sensor compare
Pf6N2E2_648 +0.7 1.8 General secretion pathway protein K compare
Pf6N2E2_3037 +0.7 5.7 RNA polymerase sigma factor RpoS compare
Pf6N2E2_264 +0.7 3.3 Transcriptional regulator, TetR family compare
Pf6N2E2_6029 +0.7 2.1 hypothetical protein compare
Pf6N2E2_2519 +0.7 1.4 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_3206 +0.7 1.4 hypothetical protein compare
Pf6N2E2_1682 +0.7 1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_1463 +0.7 1.7 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_4305 +0.7 1.6 FIG00959590: hypothetical protein compare
Pf6N2E2_4678 +0.7 1.0 hypothetical protein compare
Pf6N2E2_3947 +0.7 1.6 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_2022 +0.7 3.3 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_4414 +0.7 2.1 FIG00953808: hypothetical protein compare
Pf6N2E2_464 +0.6 1.2 Sensory histidine kinase QseC compare
Pf6N2E2_2195 +0.6 2.4 cI compare
Pf6N2E2_893 +0.6 1.3 hypothetical protein compare
Pf6N2E2_4160 +0.6 1.2 Cytochrome c5 compare
Pf6N2E2_6045 +0.6 1.3 hypothetical protein compare
Pf6N2E2_3338 +0.6 1.4 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_5168 +0.6 3.1 Regulator of competence-specific genes compare
Pf6N2E2_5571 +0.6 1.2 hypothetical protein compare
Pf6N2E2_6062 +0.6 4.1 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_350 +0.5 1.7 Gfa-like protein compare
Pf6N2E2_3397 +0.5 1.9 Phage protein compare
Pf6N2E2_2578 +0.5 2.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_1092 +0.5 2.1 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
Pf6N2E2_160 +0.5 1.5 hypothetical protein compare
Pf6N2E2_295 +0.5 1.8 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_5646 +0.5 1.0 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_2561 +0.5 1.7 FIG00955434: hypothetical protein compare
Pf6N2E2_2175 +0.5 2.1 Transcriptional regulator, RpiR family compare
Pf6N2E2_2503 +0.5 1.1 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2140 +0.5 2.3 Paraquat-inducible protein A compare
Pf6N2E2_1735 +0.5 1.5 PhnB protein compare
Pf6N2E2_280 +0.5 2.2 hypothetical protein compare
Pf6N2E2_5131 +0.5 2.7 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_1281 +0.5 1.4 ATPase involved in DNA repair compare
Pf6N2E2_2592 +0.5 2.5 Flagellar motor switch protein FliG compare
Pf6N2E2_2003 +0.5 1.5 hypothetical protein compare
Pf6N2E2_4974 +0.5 3.4 DedA protein compare
Pf6N2E2_4110 +0.5 2.0 FIG01201438: hypothetical protein compare
Pf6N2E2_2582 +0.5 1.1 Flagellar motor switch protein FliN compare
Pf6N2E2_1083 +0.5 1.2 hypothetical protein compare
Pf6N2E2_611 +0.5 2.5 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) compare
Pf6N2E2_5910 +0.5 1.4 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_2367 +0.5 1.1 hypothetical protein compare
Pf6N2E2_1877 +0.5 1.4 putative transmembrane efflux protein. compare
Pf6N2E2_5991 +0.5 2.0 proteinase inhibitor compare
Pf6N2E2_5806 +0.5 1.8 hypothetical protein compare
Pf6N2E2_5024 +0.5 1.9 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_3328 +0.5 0.6 transcriptional regulator compare
Pf6N2E2_146 +0.5 1.4 Transcriptional regulator, MarR family compare
Pf6N2E2_1674 +0.5 2.9 Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) compare
Pf6N2E2_241 +0.5 1.0 hypothetical protein compare
Pf6N2E2_2081 +0.5 1.1 putative exported protein compare
Pf6N2E2_172 +0.5 1.8 FIG00953292: hypothetical protein compare
Pf6N2E2_3326 +0.5 1.2 hypothetical protein compare
Pf6N2E2_258 +0.5 1.4 Nicotinamidase family protein YcaC compare
Pf6N2E2_4640 +0.5 1.0 hypothetical protein compare
Pf6N2E2_5746 +0.5 1.6 Cobalamin synthase compare
Pf6N2E2_5753 +0.5 3.0 Glutathione peroxidase family protein compare
Pf6N2E2_309 +0.5 0.9 FIG00957702: hypothetical protein compare
Pf6N2E2_1479 +0.5 2.3 Subtilisin-like serine proteases compare
Pf6N2E2_2152 +0.4 1.1 hypothetical protein compare
Pf6N2E2_180 +0.4 1.7 Transcriptional regulator, MerR family compare
Pf6N2E2_2580 +0.4 1.5 Flagellar biosynthesis protein FliP compare
Pf6N2E2_1141 +0.4 1.6 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_1444 +0.4 1.4 Transcriptional regulator, LysR family compare
Pf6N2E2_1085 +0.4 1.7 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_6022 +0.4 1.1 StbE replicon stabilization toxin compare
Pf6N2E2_2418 +0.4 1.4 DNA-binding response regulator, LuxR family compare
Pf6N2E2_1834 +0.4 0.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_605 +0.4 1.6 FIG002465: BNR repeat protein compare
Pf6N2E2_5622 +0.4 1.6 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_3074 +0.4 1.3 FIG00960973: hypothetical protein compare
Pf6N2E2_3386 +0.4 2.1 hypothetical protein compare
Pf6N2E2_673 +0.4 1.7 Probable permease of ABC transporter compare
Pf6N2E2_1099 +0.4 1.3 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_1526 +0.4 1.8 MgtC family compare
Pf6N2E2_1806 +0.4 1.4 hypothetical protein compare
Pf6N2E2_5226 +0.4 1.2 FIG00955589: hypothetical protein compare
Pf6N2E2_1356 +0.4 2.1 phosphoesterase, putative compare
Pf6N2E2_1621 +0.4 1.9 hypothetical protein compare
Pf6N2E2_3248 +0.4 2.0 Probable transmembrane protein compare
Pf6N2E2_1759 +0.4 1.4 uncharacterized domain 1 compare
Pf6N2E2_89 +0.4 1.2 hypothetical protein compare
Pf6N2E2_5993 +0.4 0.8 FIG00957412: hypothetical protein compare
Pf6N2E2_1813 +0.4 1.8 ABC-type oligopeptide transport system, ATPase component compare
Pf6N2E2_913 +0.4 2.1 FIG00958137: hypothetical protein compare
Pf6N2E2_1654 +0.4 1.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3872 +0.4 1.7 hypothetical protein compare
Pf6N2E2_2790 +0.4 1.5 Helix-turn-helix motif compare
Pf6N2E2_4668 +0.4 2.4 FIG00953367: hypothetical protein compare
Pf6N2E2_1090 +0.4 2.1 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf6N2E2_2456 +0.4 1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_2927 +0.4 1.1 Putative signal peptide protein compare
Pf6N2E2_5876 +0.4 1.9 Lipase (EC 3.1.1.3) compare
Pf6N2E2_2355 +0.4 2.3 MxiG protein; Pathogenicity 1 island effector protein compare
Pf6N2E2_5621 +0.4 1.6 DNA-binding response regulator compare
Pf6N2E2_2282 +0.4 1.3 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_6130 +0.4 1.8 5S RNA compare
Pf6N2E2_902 +0.4 1.3 hypothetical protein compare
Pf6N2E2_4062 +0.4 1.5 hypothetical protein compare
Pf6N2E2_3271 +0.4 1.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4052 +0.4 0.9 FIG00955481: hypothetical protein compare
Pf6N2E2_896 +0.4 1.7 Regulatory protein, LysR:LysR, substrate-binding compare
Pf6N2E2_819 +0.4 1.5 Response regulator compare
Pf6N2E2_3541 +0.4 2.1 Putative multicopper oxidases compare
Pf6N2E2_127 +0.4 1.0 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_5902 +0.4 1.4 hypothetical protein compare
Pf6N2E2_2712 +0.4 2.6 Permeases of the major facilitator superfamily compare
Pf6N2E2_3868 +0.4 2.7 Transcriptional regulator, LysR family compare
Pf6N2E2_6061 +0.4 2.8 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_933 +0.4 2.1 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_3870 +0.4 1.4 hypothetical protein compare
Pf6N2E2_1129 +0.4 1.6 Sensor histidine kinase compare
Pf6N2E2_652 +0.4 1.1 General secretion pathway protein E compare
Pf6N2E2_831 +0.4 1.4 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_5575 +0.4 2.0 Glycerol uptake facilitator protein compare
Pf6N2E2_1392 +0.4 1.7 sensor histidine kinase compare
Pf6N2E2_865 +0.4 1.1 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2633 +0.4 1.6 Nitroreductase family protein compare
Pf6N2E2_724 +0.4 0.6 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_3498 +0.4 1.3 FIG00953349: hypothetical protein compare
Pf6N2E2_574 +0.4 1.8 Transporter, LysE family compare
Pf6N2E2_5872 +0.4 2.9 Sensor histidine kinase/response regulator compare
Pf6N2E2_955 +0.4 1.2 FIG00953508: hypothetical protein compare
Pf6N2E2_2054 +0.4 1.3 hypothetical protein compare
Pf6N2E2_300 +0.4 1.3 CrcB protein compare
Pf6N2E2_469 +0.4 1.0 lipoprotein, putative compare
Pf6N2E2_3812 +0.4 2.2 FIG027190: Putative transmembrane protein compare
Pf6N2E2_6035 +0.4 1.2 alpha/beta hydrolase fold compare
Pf6N2E2_1563 +0.4 2.0 Transcriptional regulator, AraC family compare
Pf6N2E2_1758 +0.4 0.9 Transcriptional regulator, MarR family compare
Pf6N2E2_5604 +0.4 1.8 Putative heme iron utilization protein compare
Pf6N2E2_734 +0.4 1.2 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_88 +0.4 0.8 hypothetical protein compare
Pf6N2E2_2769 +0.4 1.9 Tricarboxylate transport protein TctB compare
Pf6N2E2_4584 +0.4 1.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4897 +0.4 1.6 hypothetical protein compare
Pf6N2E2_1807 +0.4 2.1 hypothetical protein compare
Pf6N2E2_1209 +0.4 1.8 hypothetical protein compare
Pf6N2E2_3321 +0.4 2.2 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_4773 +0.4 0.7 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1476 +0.4 1.3 (AF179595) Vco33 compare
Pf6N2E2_1580 +0.4 2.1 putative two-component system response regulator compare
Pf6N2E2_2105 +0.4 1.1 Metal transporter, ZIP family compare
Pf6N2E2_260 +0.4 1.7 Regulator of cell morphogenesis and NO signaling compare
Pf6N2E2_919 +0.4 0.8 FIG00954373: hypothetical protein compare
Pf6N2E2_2861 +0.4 1.7 hypothetical protein compare
Pf6N2E2_2288 +0.4 1.7 FIG00953423: hypothetical protein compare
Pf6N2E2_6164 +0.4 0.7 tRNA-Val-TAC compare
Pf6N2E2_3438 +0.4 2.0 Glyoxalase family protein compare
Pf6N2E2_2207 +0.4 1.2 cytochrome b(561) compare
Pf6N2E2_382 +0.3 2.2 RNA:NAD 2'-phosphotransferase compare
Pf6N2E2_1825 +0.3 1.3 FOG: EAL domain protein compare
Pf6N2E2_1113 +0.3 0.6 Transcriptional regulator, TetR family compare
Pf6N2E2_1740 +0.3 1.5 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_1722 +0.3 1.6 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) compare
Pf6N2E2_2447 +0.3 1.8 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5128 +0.3 1.8 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_417 +0.3 1.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_5844 +0.3 2.0 Membrane protein, putative compare
Pf6N2E2_6084 +0.3 2.0 FIG00638667: hypothetical protein compare
Pf6N2E2_338 +0.3 0.7 Transcriptional regulator, AraC family compare
Pf6N2E2_2247 +0.3 1.4 Transcriptional regulator, AraC family compare
Pf6N2E2_961 +0.3 1.2 FIG00954712: hypothetical protein compare
Pf6N2E2_5820 +0.3 1.0 FIG00957914: hypothetical protein compare
Pf6N2E2_570 +0.3 0.9 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf6N2E2_367 +0.3 1.1 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_49 +0.3 1.1 FIG00967200: hypothetical protein compare
Pf6N2E2_2956 +0.3 2.5 mRNA 3-end processing factor compare
Pf6N2E2_537 +0.3 1.7 Na(+) H(+) antiporter subunit C compare
Pf6N2E2_1438 +0.3 1.2 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_5645 +0.3 1.5 Transcriptional regulator, LysR family compare
Pf6N2E2_498 +0.3 1.9 Dihydropyrimidinase (EC 3.5.2.2) (from data) compare
Pf6N2E2_3726 +0.3 1.9 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf6N2E2_2752 +0.3 2.4 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3871 +0.3 2.9 FIG00553872: hypothetical protein compare
Pf6N2E2_4827 +0.3 1.2 Lipoate-protein ligase A compare
Pf6N2E2_103 +0.3 1.6 Various polyols ABC transporter, ATP-binding component compare
Pf6N2E2_1824 +0.3 0.5 hypothetical protein compare
Pf6N2E2_463 +0.3 1.6 Transcriptional regulatory protein RstA compare
Pf6N2E2_94 +0.3 1.8 Cyn operon transcriptional activator compare
Pf6N2E2_4332 +0.3 1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments