Experiment setAIT064 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 24 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -7.4 -5.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4416 -4.3 -4.2 Tyrosine recombinase XerC compare
Pf6N2E2_4353 -4.3 -5.0 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4908 -3.0 -10.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3303 -2.9 -5.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4352 -2.7 -4.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3661 -2.6 -5.7 hypothetical protein compare
Pf6N2E2_4162 -2.0 -4.2 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2217 -2.0 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2753 -1.9 -3.4 HtrA protease/chaperone protein compare
Pf6N2E2_3460 -1.8 -2.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3351 -1.8 -5.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3659 -1.7 -5.8 Protein fixF compare
Pf6N2E2_5103 -1.7 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5508 -1.7 -2.3 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2320 -1.6 -3.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2127 -1.6 -5.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3607 -1.5 -6.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5014 -1.5 -2.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3908 -1.5 -6.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4418 -1.4 -1.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5527 -1.4 -2.3 Cold shock protein CspC compare
Pf6N2E2_2755 -1.3 -1.8 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3612 -1.3 -2.5 HflK protein compare
Pf6N2E2_5156 -1.3 -2.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1450 -1.3 -2.2 FIG00960438: hypothetical protein compare
Pf6N2E2_3461 -1.3 -1.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2311 -1.3 -6.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2549 -1.3 -1.7 hypothetical protein compare
Pf6N2E2_4454 -1.2 -4.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2218 -1.2 -3.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_1136 -1.2 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_2126 -1.2 -5.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_5069 -1.2 -5.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_1056 -1.2 -1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2189 -1.1 -4.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4057 -1.1 -1.2 lipoprotein, putative compare
Pf6N2E2_3847 -1.1 -3.0 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3480 -1.1 -1.8 Transcriptional regulator, ArsR family compare
Pf6N2E2_3667 -1.1 -1.4 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3264 -1.1 -1.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5705 -1.1 -1.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_384 -1.1 -3.3 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5727 -1.0 -4.3 FIG00955360: hypothetical protein compare
Pf6N2E2_623 -1.0 -1.5 FIG00954674: hypothetical protein compare
Pf6N2E2_2318 -1.0 -5.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_746 -1.0 -1.8 FIG00958097: hypothetical protein compare
Pf6N2E2_4803 -1.0 -1.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2325 -1.0 -3.8 Recombination protein RecR compare
Pf6N2E2_2309 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_3841 -1.0 -4.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_144 -1.0 -7.9 Uncharacterized protein YtfM precursor compare
Pf6N2E2_2536 -1.0 -1.2 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_622 -0.9 -3.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5536 -0.9 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4369 -0.9 -1.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3074 -0.9 -1.8 FIG00960973: hypothetical protein compare
Pf6N2E2_3658 -0.9 -4.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3060 -0.9 -2.2 Outer membrane protein H precursor compare
Pf6N2E2_43 -0.9 -3.7 Histidine permease YuiF compare
Pf6N2E2_5430 -0.9 -5.0 Transglycosylase, Slt family compare
Pf6N2E2_4638 -0.9 -2.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_33 -0.9 -2.4 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5338 -0.9 -4.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_145 -0.9 -5.6 putative exported protein compare
Pf6N2E2_5316 -0.9 -1.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_1424 -0.9 -1.6 transcriptional regulator, TetR family compare
Pf6N2E2_1089 -0.8 -1.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_4987 -0.8 -1.2 MaoC-like domain protein compare
Pf6N2E2_3260 -0.8 -3.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3763 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_2390 -0.8 -1.7 FIG00959101: hypothetical protein compare
Pf6N2E2_5068 -0.8 -5.5 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2940 -0.8 -3.0 OmpA family protein compare
Pf6N2E2_2219 -0.8 -1.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_819 -0.8 -2.4 Response regulator compare
Pf6N2E2_2310 -0.8 -5.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2261 -0.8 -4.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_5428 -0.8 -4.0 DNA recombination and repair protein RecO compare
Pf6N2E2_719 -0.8 -2.3 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_2062 -0.8 -2.4 FIG00955561: hypothetical protein compare
Pf6N2E2_4548 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_902 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_4187 -0.8 -2.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2714 -0.8 -1.7 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_4372 -0.8 -3.3 FIG00460773: hypothetical protein compare
Pf6N2E2_5677 -0.8 -1.3 Carbon storage regulator compare
Pf6N2E2_5406 -0.8 -1.9 FIG00958224: hypothetical protein compare
Pf6N2E2_971 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_5339 -0.8 -3.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5262 -0.8 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_4159 -0.8 -2.6 Cytochrome c4 compare
Pf6N2E2_712 -0.8 -2.7 hypothetical protein compare
Pf6N2E2_420 -0.7 -1.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3534 -0.7 -1.9 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2675 -0.7 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_1352 -0.7 -1.5 Cation transport ATPase compare
Pf6N2E2_2139 -0.7 -1.6 Paraquat-inducible protein A compare
Pf6N2E2_5337 -0.7 -2.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2384 -0.7 -2.1 CmpX compare
Pf6N2E2_1441 -0.7 -1.3 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_1502 -0.7 -1.8 Two-component system regulatory protein compare
Pf6N2E2_238 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_1339 -0.7 -2.1 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_4206 -0.7 -1.2 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2317 -0.7 -2.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3782 -0.7 -2.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3134 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_3842 -0.7 -2.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_663 -0.7 -2.1 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_3786 -0.7 -2.3 Twin-arginine translocation protein TatC compare
Pf6N2E2_1032 -0.7 -1.1 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_2588 -0.7 -2.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_3373 -0.7 -1.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4197 -0.7 -3.9 DNA recombination and repair protein RecF compare
Pf6N2E2_3876 -0.7 -2.5 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_504 -0.7 -1.8 DNA-binding response regulator compare
Pf6N2E2_4417 -0.7 -2.7 Protein of unknown function DUF484 compare
Pf6N2E2_2274 -0.7 -3.0 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_1696 -0.7 -1.9 Alkanesulfonates-binding protein compare
Pf6N2E2_736 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_904 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_2795 -0.7 -1.7 putative exported protein compare
Pf6N2E2_1371 -0.7 -2.5 hypothetical protein compare
Pf6N2E2_1545 -0.7 -2.4 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2284 -0.7 -1.3 Cell division inhibitor-related protein compare
Pf6N2E2_5340 -0.7 -2.3 Stringent starvation protein A compare
Pf6N2E2_6063 -0.7 -3.3 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3969 -0.7 -1.5 Membrane-fusion protein compare
Pf6N2E2_942 -0.6 -0.9 Mll6465 protein compare
Pf6N2E2_2285 -0.6 -1.2 FIG00954079: hypothetical protein compare
Pf6N2E2_4797 -0.6 -0.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5664 -0.6 -2.8 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_2111 -0.6 -1.6 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_4494 -0.6 -2.6 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_3258 -0.6 -1.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3100 -0.6 -1.7 FIG00953063: hypothetical protein compare
Pf6N2E2_2181 -0.6 -1.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3252 -0.6 -2.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_687 -0.6 -1.2 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_2007 -0.6 -2.3 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_6099 -0.6 -1.0 tRNA-Glu-TTC compare
Pf6N2E2_2970 -0.6 -1.7 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_3021 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_625 -0.6 -2.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2313 -0.6 -1.8 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2012 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_216 -0.6 -2.5 Copper-sensing two-component system response regulator CpxR compare
Pf6N2E2_3370 -0.6 -4.5 DNA repair protein RecN compare
Pf6N2E2_4612 -0.6 -2.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_1534 -0.6 -1.0 Probable transmembrane protein compare
Pf6N2E2_1932 -0.6 -2.6 Transcriptional regulator, IclR family compare
Pf6N2E2_3716 -0.6 -1.6 FIG143263: Glycosyl transferase compare
Pf6N2E2_3839 -0.6 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2830 -0.6 -1.9 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
Pf6N2E2_1179 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_704 -0.6 -2.0 Cytochrome c551/c552 compare
Pf6N2E2_55 -0.6 -1.6 Probable hydrolase compare
Pf6N2E2_1972 -0.6 -1.2 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_1699 -0.6 -1.1 FIG00955832: hypothetical protein compare
Pf6N2E2_4962 -0.6 -1.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5845 -0.6 -2.6 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_3261 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_193 -0.6 -2.2 hypothetical protein compare
Pf6N2E2_2962 -0.6 -2.1 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_3656 -0.6 -2.6 Probable transcription regulator Mig-14 compare
Pf6N2E2_2736 -0.6 -2.3 hypothetical protein compare
Pf6N2E2_5226 -0.6 -1.2 FIG00955589: hypothetical protein compare
Pf6N2E2_973 -0.6 -2.7 Single-stranded DNA-binding protein compare
Pf6N2E2_629 -0.6 -1.7 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_5291 -0.6 -4.9 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2488 -0.5 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2200 -0.5 -0.7 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_4145 -0.5 -1.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_451 -0.5 -1.6 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3603 -0.5 -2.7 FIG003573: hypothetical protein compare
Pf6N2E2_1496 -0.5 -2.1 Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3257 -0.5 -1.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4535 -0.5 -2.7 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Pf6N2E2_3696 -0.5 -0.8 hypothetical protein compare
Pf6N2E2_4204 -0.5 -1.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_156 -0.5 -0.9 Carbon storage regulator compare
Pf6N2E2_1412 -0.5 -1.5 hypothetical protein compare
Pf6N2E2_5252 -0.5 -1.1 FIG00956396: hypothetical protein compare
Pf6N2E2_319 -0.5 -1.7 DUF1850 domain-containing protein compare
Pf6N2E2_734 -0.5 -1.6 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_310 -0.5 -2.1 hypothetical protein compare
Pf6N2E2_5321 -0.5 -3.3 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2324 -0.5 -1.6 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_5242 -0.5 -1.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2208 -0.5 -1.6 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_2552 -0.5 -2.7 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4205 -0.5 -1.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2059 -0.5 -0.9 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1445 -0.5 -1.7 Glutathione S-transferase compare
Pf6N2E2_2010 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_2292 -0.5 -1.9 Universal stress protein family COG0589 compare
Pf6N2E2_4705 -0.5 -2.9 Electron transfer flavoprotein, alpha subunit compare
Pf6N2E2_2193 -0.5 -2.5 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_4886 -0.5 -3.5 Catalase (EC 1.11.1.6) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments