Experiment setAIT064 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 24 hours

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_5720 +1.5 12.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2022 +1.2 5.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_3349 +1.2 1.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5571 +1.1 2.5 hypothetical protein compare
Pf6N2E2_1492 +1.1 3.4 No significant database matches compare
Pf6N2E2_3282 +1.1 2.4 FIG005080: Possible exported protein compare
Pf6N2E2_81 +1.0 2.5 hypothetical protein compare
Pf6N2E2_1981 +0.9 3.6 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_865 +0.9 2.6 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2503 +0.9 2.4 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2869 +0.8 1.5 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_4624 +0.8 1.4 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_3325 +0.8 2.7 ABC transporter, ATP-binding protein compare
Pf6N2E2_3947 +0.8 2.4 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_3729 +0.8 3.7 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) compare
Pf6N2E2_160 +0.8 1.2 hypothetical protein compare
Pf6N2E2_1116 +0.8 1.2 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_1705 +0.8 1.8 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3498 +0.8 3.0 FIG00953349: hypothetical protein compare
Pf6N2E2_2286 +0.8 1.3 FIG00953287: hypothetical protein compare
Pf6N2E2_2519 +0.8 1.6 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_6090 +0.7 1.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_3328 +0.7 2.0 transcriptional regulator compare
Pf6N2E2_4392 +0.7 1.6 Translation initiation inhibitor compare
Pf6N2E2_264 +0.7 3.2 Transcriptional regulator, TetR family compare
Pf6N2E2_4181 +0.7 1.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_4423 +0.7 2.1 FIG00953342: hypothetical protein compare
Pf6N2E2_2223 +0.7 2.5 hypothetical protein compare
Pf6N2E2_3206 +0.7 1.6 hypothetical protein compare
Pf6N2E2_5499 +0.7 1.2 hypothetical protein compare
Pf6N2E2_5024 +0.7 2.2 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_3004 +0.6 2.4 Prophage baseplate assembly protein V compare
Pf6N2E2_2017 +0.6 1.8 DNA-binding protein compare
Pf6N2E2_659 +0.6 2.3 Transcriptional regulatory protein ompR compare
Pf6N2E2_6059 +0.6 1.9 FIG008443: hypothetical protein compare
Pf6N2E2_1040 +0.6 1.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_136 +0.6 2.3 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_3171 +0.6 1.2 hypothetical protein compare
Pf6N2E2_765 +0.6 2.5 Fap system putative outer membrane protein compare
Pf6N2E2_280 +0.6 2.3 hypothetical protein compare
Pf6N2E2_1984 +0.6 2.9 probable exported protein STY4558 compare
Pf6N2E2_4928 +0.6 1.2 Permeases of the major facilitator superfamily compare
Pf6N2E2_4974 +0.6 3.8 DedA protein compare
Pf6N2E2_5622 +0.6 1.4 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_2080 +0.6 1.0 hypothetical protein compare
Pf6N2E2_6062 +0.6 3.8 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_1319 +0.6 2.1 FIG074102: hypothetical protein compare
Pf6N2E2_3505 +0.6 1.4 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4640 +0.6 0.7 hypothetical protein compare
Pf6N2E2_1012 +0.6 2.0 hypothetical protein compare
Pf6N2E2_3088 +0.6 1.2 hypothetical protein compare
Pf6N2E2_6038 +0.6 1.7 hypothetical protein compare
Pf6N2E2_4414 +0.6 1.5 FIG00953808: hypothetical protein compare
Pf6N2E2_1083 +0.6 1.7 hypothetical protein compare
Pf6N2E2_3037 +0.6 4.0 RNA polymerase sigma factor RpoS compare
Pf6N2E2_5555 +0.6 1.4 Cold shock protein CspA compare
Pf6N2E2_361 +0.6 2.5 Peptide ABC transporter, permease protein compare
Pf6N2E2_5862 +0.6 2.0 Lipoprotein, putative compare
Pf6N2E2_4272 +0.6 1.5 putative membrane protein compare
Pf6N2E2_1092 +0.5 2.3 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
Pf6N2E2_2447 +0.5 3.2 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_1173 +0.5 1.6 hypothetical protein compare
Pf6N2E2_6065 +0.5 1.3 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_4146 +0.5 1.4 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_5990 +0.5 1.0 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_1294 +0.5 1.7 Carbon starvation protein A compare
Pf6N2E2_831 +0.5 2.0 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_1435 +0.5 1.6 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_259 +0.5 2.6 Transcriptional regulator, LysR family compare
Pf6N2E2_6029 +0.5 1.5 hypothetical protein compare
Pf6N2E2_3864 +0.5 2.1 hypothetical protein compare
Pf6N2E2_2247 +0.5 2.0 Transcriptional regulator, AraC family compare
Pf6N2E2_3737 +0.5 1.4 General secretion pathway protein M compare
Pf6N2E2_2582 +0.5 1.9 Flagellar motor switch protein FliN compare
Pf6N2E2_1560 +0.5 2.0 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_4427 +0.5 1.5 FIG00954215: hypothetical protein compare
Pf6N2E2_1875 +0.5 1.9 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_4678 +0.5 0.7 hypothetical protein compare
Pf6N2E2_94 +0.5 2.9 Cyn operon transcriptional activator compare
Pf6N2E2_1215 +0.5 1.3 probable membrane protein YPO2362 compare
Pf6N2E2_3271 +0.5 1.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_103 +0.5 1.7 Various polyols ABC transporter, ATP-binding component compare
Pf6N2E2_426 +0.5 2.7 Arsenate reductase (EC 1.20.4.1) compare
Pf6N2E2_2367 +0.5 1.0 hypothetical protein compare
Pf6N2E2_1009 +0.5 1.5 Inositol transport system permease protein compare
Pf6N2E2_2501 +0.5 1.8 hypothetical protein compare
Pf6N2E2_350 +0.5 1.4 Gfa-like protein compare
Pf6N2E2_4570 +0.5 1.5 Cation/multidrug efflux pump compare
Pf6N2E2_4732 +0.5 1.1 hypothetical protein compare
Pf6N2E2_1750 +0.5 2.3 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_1354 +0.5 1.8 FIG026291: Hypothetical periplasmic protein compare
Pf6N2E2_2636 +0.5 1.4 FIG027190: Putative transmembrane protein compare
Pf6N2E2_1735 +0.5 1.5 PhnB protein compare
Pf6N2E2_3219 +0.5 1.2 hypothetical protein compare
Pf6N2E2_5755 +0.5 1.8 FIG00956435: hypothetical protein compare
Pf6N2E2_3454 +0.5 1.6 hypothetical protein compare
Pf6N2E2_3550 +0.5 1.2 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_3942 +0.5 3.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_958 +0.5 1.7 hypothetical protein compare
Pf6N2E2_1033 +0.5 2.0 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_5476 +0.4 1.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_5733 +0.4 2.5 NLP/P60 family protein compare
Pf6N2E2_1671 +0.4 2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_3108 +0.4 1.8 FIG00953405: hypothetical protein compare
Pf6N2E2_1682 +0.4 1.5 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_3702 +0.4 1.4 FIG00953907: hypothetical protein compare
Pf6N2E2_2152 +0.4 0.7 hypothetical protein compare
Pf6N2E2_3406 +0.4 1.5 putative ABC transporter ATP-binding protein compare
Pf6N2E2_2572 +0.4 1.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2712 +0.4 2.5 Permeases of the major facilitator superfamily compare
Pf6N2E2_1124 +0.4 0.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4719 +0.4 2.7 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf6N2E2_3731 +0.4 2.3 hypothetical protein compare
Pf6N2E2_4110 +0.4 2.0 FIG01201438: hypothetical protein compare
Pf6N2E2_2418 +0.4 1.8 DNA-binding response regulator, LuxR family compare
Pf6N2E2_5959 +0.4 2.2 Type IV pilus biogenesis protein PilZ compare
Pf6N2E2_4733 +0.4 1.0 hypothetical protein compare
Pf6N2E2_1129 +0.4 2.0 Sensor histidine kinase compare
Pf6N2E2_5723 +0.4 3.4 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_209 +0.4 2.9 O-antigen export system permease protein RfbD compare
Pf6N2E2_1113 +0.4 1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_1006 +0.4 1.6 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_1526 +0.4 1.7 MgtC family compare
Pf6N2E2_349 +0.4 1.4 hypothetical protein compare
Pf6N2E2_4543 +0.4 1.9 hypothetical protein compare
Pf6N2E2_4362 +0.4 1.3 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3529 +0.4 1.3 Toxin A compare
Pf6N2E2_3875 +0.4 0.6 FIG00953324: hypothetical protein compare
Pf6N2E2_1479 +0.4 2.4 Subtilisin-like serine proteases compare
Pf6N2E2_2479 +0.4 1.5 Transcription elongation factor GreB compare
Pf6N2E2_767 +0.4 2.8 Fap amyloid fibril major component compare
Pf6N2E2_6052 +0.4 1.3 Hydantoin racemase (EC 5.1.99.-) compare
Pf6N2E2_952 +0.4 1.4 putative exported protein compare
Pf6N2E2_539 +0.4 2.0 hypothetical protein compare
Pf6N2E2_6095 +0.4 1.3 tRNA-Asn-GTT compare
Pf6N2E2_2279 +0.4 2.1 FIG00954981: hypothetical protein compare
Pf6N2E2_4128 +0.4 1.6 hypothetical protein compare
Pf6N2E2_5902 +0.4 1.3 hypothetical protein compare
Pf6N2E2_2296 +0.4 1.3 FIG00954767: hypothetical protein compare
Pf6N2E2_1152 +0.4 1.0 hypothetical protein compare
Pf6N2E2_4025 +0.4 1.0 hypothetical protein compare
Pf6N2E2_5345 +0.4 2.3 LppC putative lipoprotein compare
Pf6N2E2_3717 +0.4 2.1 Lysophospholipid acyltransferase compare
Pf6N2E2_3426 +0.4 2.7 Peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_1561 +0.4 1.9 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2438 +0.4 0.9 hypothetical protein compare
Pf6N2E2_5584 +0.4 1.4 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_5086 +0.4 0.8 hypothetical protein compare
Pf6N2E2_5816 +0.4 0.7 Smr domain protein compare
Pf6N2E2_5168 +0.4 1.7 Regulator of competence-specific genes compare
Pf6N2E2_4545 +0.4 1.1 hypothetical protein compare
Pf6N2E2_5128 +0.4 1.5 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_5848 +0.4 1.8 small component of pyruvate transporter (yjcH-like) (from data) compare
Pf6N2E2_4124 +0.4 2.9 Uncharacterized protein with LysM domain, COG1652 compare
Pf6N2E2_4743 +0.4 0.7 hypothetical protein compare
Pf6N2E2_2752 +0.4 2.7 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2387 +0.4 1.9 Ribonuclease E inhibitor RraA compare
Pf6N2E2_3240 +0.4 0.8 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_4070 +0.4 2.4 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_1783 +0.4 1.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2778 +0.4 1.3 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_2366 +0.4 1.6 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Pf6N2E2_3611 +0.4 0.5 HflC protein compare
Pf6N2E2_5874 +0.4 3.5 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins compare
Pf6N2E2_6047 +0.4 1.1 hypothetical protein compare
Pf6N2E2_2361 +0.4 2.6 Type III secretion chaperone protein for YopD (SycD) compare
Pf6N2E2_407 +0.4 2.1 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_3723 +0.4 1.8 FIG022199: FAD-binding protein compare
Pf6N2E2_37 +0.4 1.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_544 +0.4 1.4 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_423 +0.4 0.8 Putative phosphatase YfbT compare
Pf6N2E2_1807 +0.4 2.3 hypothetical protein compare
Pf6N2E2_1340 +0.4 1.2 major pilin protein fimA compare
Pf6N2E2_1022 +0.4 1.6 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_1694 +0.4 0.8 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5265 +0.4 1.8 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf6N2E2_4715 +0.4 2.0 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_5704 +0.4 1.9 Transcriptional regulatory protein PhoP compare
Pf6N2E2_494 +0.4 1.2 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_2597 +0.4 2.6 Flagellar regulatory protein FleQ compare
Pf6N2E2_2500 +0.4 1.7 Putative membrane protein compare
Pf6N2E2_1283 +0.4 0.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1678 +0.4 2.4 Major facilitator family transporter compare
Pf6N2E2_4045 +0.4 1.4 FIG00953248: hypothetical protein compare
Pf6N2E2_1098 +0.4 1.5 Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein compare
Pf6N2E2_2064 +0.4 1.1 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_4489 +0.4 1.8 Putative activity regulator of membrane protease YbbK compare
Pf6N2E2_1654 +0.4 1.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4534 +0.4 1.4 hypothetical protein compare
Pf6N2E2_2357 +0.4 1.2 Invasion protein iagA compare
Pf6N2E2_2195 +0.4 1.0 cI compare
Pf6N2E2_2045 +0.4 0.9 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_5309 +0.4 2.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_370 +0.4 1.3 Predicted enzyme of the cupin superfamily compare
Pf6N2E2_3848 +0.4 2.4 hypothetical protein compare
Pf6N2E2_1723 +0.4 0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_2089 +0.4 1.3 Transcriptional regulator, AraC family compare
Pf6N2E2_2496 +0.4 0.9 FIG00956575: hypothetical protein compare
Pf6N2E2_5696 +0.4 2.2 Flagellar basal-body rod modification protein FlgD compare
Pf6N2E2_2827 +0.4 0.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments