Experiment setAIT063 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 24 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -4.8 -4.8 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4353 -4.5 -5.7 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3659 -3.1 -5.3 Protein fixF compare
Pf6N2E2_3303 -2.9 -4.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3661 -2.7 -5.4 hypothetical protein compare
Pf6N2E2_3461 -2.3 -2.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4187 -2.3 -4.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3658 -2.3 -8.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5527 -2.2 -2.9 Cold shock protein CspC compare
Pf6N2E2_4416 -2.2 -4.3 Tyrosine recombinase XerC compare
Pf6N2E2_2219 -2.1 -2.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5727 -2.1 -5.5 FIG00955360: hypothetical protein compare
Pf6N2E2_4797 -2.0 -3.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4352 -2.0 -3.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4418 -2.0 -1.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4908 -2.0 -7.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4773 -2.0 -2.1 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_2217 -1.9 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4153 -1.9 -2.1 Sensory box histidine kinase compare
Pf6N2E2_3607 -1.8 -7.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2313 -1.8 -4.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5316 -1.7 -3.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3908 -1.6 -7.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3351 -1.6 -4.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3460 -1.5 -2.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2285 -1.5 -1.6 FIG00954079: hypothetical protein compare
Pf6N2E2_4204 -1.4 -1.7 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4454 -1.4 -4.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2586 -1.3 -1.8 Hpt domain protein compare
Pf6N2E2_5014 -1.3 -2.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_1056 -1.3 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2507 -1.3 -6.4 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3257 -1.3 -3.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2127 -1.3 -4.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2753 -1.2 -2.6 HtrA protease/chaperone protein compare
Pf6N2E2_4162 -1.2 -1.9 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5001 -1.2 -1.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3611 -1.1 -1.3 HflC protein compare
Pf6N2E2_2320 -1.1 -3.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2126 -1.1 -5.5 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2062 -1.1 -3.3 FIG00955561: hypothetical protein compare
Pf6N2E2_4611 -1.1 -3.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5536 -1.1 -2.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2506 -1.1 -8.1 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4556 -1.1 -2.6 FIG00953078: hypothetical protein compare
Pf6N2E2_3791 -1.1 -6.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5150 -1.1 -4.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2309 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_5103 -1.0 -1.4 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5068 -1.0 -6.7 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5406 -1.0 -2.2 FIG00958224: hypothetical protein compare
Pf6N2E2_6057 -1.0 -2.9 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_5156 -1.0 -2.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2124 -1.0 -1.2 Mg(2+) transport ATPase protein C compare
Pf6N2E2_3656 -1.0 -4.7 Probable transcription regulator Mig-14 compare
Pf6N2E2_3941 -1.0 -2.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5430 -1.0 -6.3 Transglycosylase, Slt family compare
Pf6N2E2_2111 -1.0 -2.5 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_5069 -1.0 -4.2 putative Cytochrome bd2, subunit II compare
Pf6N2E2_70 -1.0 -2.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2508 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_4372 -1.0 -3.6 FIG00460773: hypothetical protein compare
Pf6N2E2_6022 -0.9 -2.7 StbE replicon stabilization toxin compare
Pf6N2E2_2693 -0.9 -2.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_746 -0.9 -1.7 FIG00958097: hypothetical protein compare
Pf6N2E2_5508 -0.9 -1.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4886 -0.9 -7.1 Catalase (EC 1.11.1.6) compare
Pf6N2E2_3349 -0.9 -1.7 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3261 -0.9 -3.4 hypothetical protein compare
Pf6N2E2_1987 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_2311 -0.9 -4.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2189 -0.9 -3.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2646 -0.9 -1.4 FIG00953416: hypothetical protein compare
Pf6N2E2_3074 -0.9 -1.5 FIG00960973: hypothetical protein compare
Pf6N2E2_43 -0.9 -4.3 Histidine permease YuiF compare
Pf6N2E2_2323 -0.9 -2.5 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_2857 -0.9 -3.5 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_987 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_2318 -0.9 -4.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3833 -0.9 -4.2 hypothetical protein compare
Pf6N2E2_2940 -0.9 -4.4 OmpA family protein compare
Pf6N2E2_3792 -0.8 -3.5 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3260 -0.8 -3.7 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_423 -0.8 -1.9 Putative phosphatase YfbT compare
Pf6N2E2_2218 -0.8 -2.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3835 -0.8 -2.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5972 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_145 -0.8 -4.9 putative exported protein compare
Pf6N2E2_144 -0.8 -6.8 Uncharacterized protein YtfM precursor compare
Pf6N2E2_2469 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_6058 -0.8 -3.1 FIG139976: hypothetical protein compare
Pf6N2E2_3039 -0.8 -4.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3477 -0.8 -1.9 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3885 -0.8 -2.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_5178 -0.8 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4369 -0.8 -1.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2176 -0.8 -1.9 Amidases related to nicotinamidase compare
Pf6N2E2_2459 -0.8 -1.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_3480 -0.8 -1.4 Transcriptional regulator, ArsR family compare
Pf6N2E2_4889 -0.8 -3.2 Putative transport protein compare
Pf6N2E2_4159 -0.8 -3.1 Cytochrome c4 compare
Pf6N2E2_1339 -0.8 -2.0 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_868 -0.8 -2.5 Transcriptional regulator, HxlR family compare
Pf6N2E2_4075 -0.8 -3.2 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5312 -0.8 -2.1 FIG00964214: hypothetical protein compare
Pf6N2E2_1932 -0.8 -3.1 Transcriptional regulator, IclR family compare
Pf6N2E2_1099 -0.8 -1.6 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_3100 -0.8 -2.6 FIG00953063: hypothetical protein compare
Pf6N2E2_1983 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_4658 -0.8 -3.9 FIG00955006: hypothetical protein compare
Pf6N2E2_304 -0.8 -1.9 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_3085 -0.8 -2.2 FIG00954614: hypothetical protein compare
Pf6N2E2_55 -0.8 -2.1 Probable hydrolase compare
Pf6N2E2_663 -0.7 -3.0 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_5052 -0.7 -1.7 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_2193 -0.7 -3.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_6064 -0.7 -3.8 2-methylaconitate isomerase compare
Pf6N2E2_2397 -0.7 -2.4 Two-component system response regulator QseB compare
Pf6N2E2_3588 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_1136 -0.7 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2448 -0.7 -2.9 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_2499 -0.7 -1.9 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_4072 -0.7 -2.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2527 -0.7 -3.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3060 -0.7 -2.0 Outer membrane protein H precursor compare
Pf6N2E2_2088 -0.7 -1.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_1545 -0.7 -3.0 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4638 -0.7 -2.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3665 -0.7 -0.7 serine/threonine protein kinase compare
Pf6N2E2_4367 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_1246 -0.7 -1.9 FIG00961372: hypothetical protein compare
Pf6N2E2_3499 -0.7 -1.9 Permeases of the major facilitator superfamily compare
Pf6N2E2_4113 -0.7 -1.4 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_2325 -0.7 -3.4 Recombination protein RecR compare
Pf6N2E2_4562 -0.7 -2.4 L-cystine uptake protein TcyP compare
Pf6N2E2_3300 -0.7 -2.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_445 -0.7 -2.9 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_2266 -0.7 -2.5 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_622 -0.7 -2.8 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_819 -0.7 -1.9 Response regulator compare
Pf6N2E2_718 -0.7 -2.6 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_5632 -0.6 -2.4 Aromatic amino acid transport protein AroP compare
Pf6N2E2_3447 -0.6 -2.6 FIG00959330: hypothetical protein compare
Pf6N2E2_4168 -0.6 -3.0 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_3012 -0.6 -3.1 FIG111678: IS, phage, Tn; Transposon-related functions compare
Pf6N2E2_4678 -0.6 -0.7 hypothetical protein compare
Pf6N2E2_625 -0.6 -2.4 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_5338 -0.6 -3.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4417 -0.6 -1.8 Protein of unknown function DUF484 compare
Pf6N2E2_2310 -0.6 -4.1 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5088 -0.6 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3134 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_623 -0.6 -1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_4438 -0.6 -2.7 hypothetical protein compare
Pf6N2E2_6140 -0.6 -0.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5428 -0.6 -3.5 DNA recombination and repair protein RecO compare
Pf6N2E2_3847 -0.6 -1.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_362 -0.6 -1.9 Dipeptide transport system permease protein dppC compare
Pf6N2E2_3655 -0.6 -4.5 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2656 -0.6 -2.4 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_3876 -0.6 -2.6 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_2074 -0.6 -1.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4197 -0.6 -3.8 DNA recombination and repair protein RecF compare
Pf6N2E2_2675 -0.6 -0.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3258 -0.6 -2.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2986 -0.6 -1.6 Transcriptional regulator, LuxR family compare
Pf6N2E2_617 -0.6 -2.6 Probable glutathione S-transferase compare
Pf6N2E2_2069 -0.6 -1.7 FIG00953703: hypothetical protein compare
Pf6N2E2_1812 -0.6 -1.7 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_5633 -0.6 -5.0 Aromatic amino acid transport protein AroP compare
Pf6N2E2_3255 -0.6 -1.6 YrbA protein compare
Pf6N2E2_4743 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_1131 -0.6 -2.2 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_1560 -0.6 -2.0 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_1905 -0.6 -2.2 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_2258 -0.6 -3.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_659 -0.6 -1.7 Transcriptional regulatory protein ompR compare
Pf6N2E2_1660 -0.6 -1.4 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_1040 -0.6 -0.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_16 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_2144 -0.6 -2.9 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5337 -0.6 -2.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2896 -0.6 -2.5 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_2068 -0.6 -3.3 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_6085 -0.6 -1.4 Aha1 domain superfamily compare
Pf6N2E2_39 -0.6 -2.6 FIG00857858: hypothetical protein compare
Pf6N2E2_1774 -0.6 -1.4 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_5375 -0.6 -1.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1656 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_5339 -0.6 -2.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3132 -0.6 -1.9 FIG00954548: hypothetical protein compare
Pf6N2E2_1540 -0.6 -2.5 FIG00953528: hypothetical protein compare
Pf6N2E2_3198 -0.6 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_779 -0.6 -2.2 transporter, putative compare
Pf6N2E2_3252 -0.5 -3.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5689 -0.5 -2.0 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_3190 -0.5 -2.2 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_1699 -0.5 -1.8 FIG00955832: hypothetical protein compare
Pf6N2E2_5531 -0.5 -1.5 hypothetical protein compare
Pf6N2E2_2633 -0.5 -1.9 Nitroreductase family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments