Experiment setAIT059 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium perchlorate monohydrate 0.00625 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4353 -6.4 -7.6 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2129 -6.0 -5.8 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4352 -3.5 -4.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5242 -3.3 -3.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4204 -2.7 -2.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4162 -2.7 -4.4 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_623 -2.5 -2.3 FIG00954674: hypothetical protein compare
Pf6N2E2_4416 -2.1 -3.7 Tyrosine recombinase XerC compare
Pf6N2E2_2518 -2.1 -4.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_178 -2.1 -2.1 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_1056 -2.0 -1.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3303 -1.9 -4.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3461 -1.9 -2.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5156 -1.8 -3.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2480 -1.7 -1.9 FIG00957636: hypothetical protein compare
Pf6N2E2_5536 -1.7 -2.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2065 -1.6 -4.5 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_1596 -1.5 -1.5 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_3060 -1.5 -4.0 Outer membrane protein H precursor compare
Pf6N2E2_3908 -1.5 -6.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3351 -1.5 -3.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_88 -1.5 -1.9 hypothetical protein compare
Pf6N2E2_5155 -1.5 -3.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3607 -1.4 -6.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5943 -1.4 -2.3 hypothetical protein compare
Pf6N2E2_4803 -1.4 -1.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2127 -1.4 -4.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5430 -1.3 -7.1 Transglycosylase, Slt family compare
Pf6N2E2_5316 -1.3 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3264 -1.3 -2.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4454 -1.3 -3.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4886 -1.2 -7.2 Catalase (EC 1.11.1.6) compare
Pf6N2E2_43 -1.2 -4.9 Histidine permease YuiF compare
Pf6N2E2_5001 -1.2 -2.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2074 -1.1 -1.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4993 -1.1 -2.8 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_3460 -1.1 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_1656 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_4372 -1.1 -3.4 FIG00460773: hypothetical protein compare
Pf6N2E2_3842 -1.1 -2.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_1128 -1.1 -2.0 Two-component response regulator compare
Pf6N2E2_3786 -1.1 -2.5 Twin-arginine translocation protein TatC compare
Pf6N2E2_2753 -1.1 -2.5 HtrA protease/chaperone protein compare
Pf6N2E2_5428 -1.1 -5.5 DNA recombination and repair protein RecO compare
Pf6N2E2_2285 -1.0 -1.8 FIG00954079: hypothetical protein compare
Pf6N2E2_2318 -1.0 -5.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5527 -1.0 -1.6 Cold shock protein CspC compare
Pf6N2E2_2465 -1.0 -4.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_953 -1.0 -2.7 FIG00958851: hypothetical protein compare
Pf6N2E2_5703 -1.0 -3.5 outer membrane protein H1 compare
Pf6N2E2_5337 -1.0 -3.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2574 -1.0 -1.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_5338 -1.0 -5.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5069 -0.9 -3.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2473 -0.9 -1.2 Major outer membrane lipoprotein I compare
Pf6N2E2_1606 -0.9 -4.3 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_2072 -0.9 -2.8 hypothetical protein compare
Pf6N2E2_1617 -0.9 -1.3 COG2199: FOG: GGDEF domain compare
Pf6N2E2_2126 -0.9 -3.7 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_5068 -0.9 -6.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2217 -0.9 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3720 -0.9 -2.2 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3612 -0.9 -1.2 HflK protein compare
Pf6N2E2_5705 -0.9 -1.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5704 -0.9 -4.2 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2527 -0.9 -3.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4987 -0.9 -1.2 MaoC-like domain protein compare
Pf6N2E2_2320 -0.9 -2.4 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_309 -0.9 -1.4 FIG00957702: hypothetical protein compare
Pf6N2E2_1236 -0.9 -1.5 Transcriptional regulator, LysR family compare
Pf6N2E2_2325 -0.9 -2.7 Recombination protein RecR compare
Pf6N2E2_2384 -0.9 -2.7 CmpX compare
Pf6N2E2_5835 -0.8 -3.3 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_945 -0.8 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2219 -0.8 -1.5 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2128 -0.8 -3.1 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2794 -0.8 -1.5 putative membrane protein compare
Pf6N2E2_4381 -0.8 -3.4 hypothetical protein compare
Pf6N2E2_617 -0.8 -2.9 Probable glutathione S-transferase compare
Pf6N2E2_2310 -0.8 -4.7 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5130 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_1797 -0.8 -1.0 Transcriptional regulator compare
Pf6N2E2_5014 -0.8 -1.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2706 -0.8 -1.9 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_2061 -0.8 -2.4 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_1140 -0.8 -1.9 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_2088 -0.8 -1.7 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_4205 -0.8 -2.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4579 -0.8 -1.9 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_579 -0.8 -1.4 FIG00962753: hypothetical protein compare
Pf6N2E2_5339 -0.8 -3.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_1083 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_4531 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_3077 -0.8 -1.8 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_1322 -0.8 -2.9 MoaE protein compare
Pf6N2E2_2018 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_2311 -0.8 -3.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5633 -0.8 -5.7 Aromatic amino acid transport protein AroP compare
Pf6N2E2_6064 -0.8 -2.6 2-methylaconitate isomerase compare
Pf6N2E2_5158 -0.7 -3.2 FIG00954153: hypothetical protein compare
Pf6N2E2_5111 -0.7 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_3876 -0.7 -3.2 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_2317 -0.7 -2.7 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4197 -0.7 -3.9 DNA recombination and repair protein RecF compare
Pf6N2E2_1499 -0.7 -2.1 ABC transporter amino acid-binding protein compare
Pf6N2E2_4273 -0.7 -3.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_1169 -0.7 -1.9 TnpR protein compare
Pf6N2E2_1506 -0.7 -1.7 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_1545 -0.7 -2.2 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3919 -0.7 -4.6 Cystine ABC transporter, periplasmic cystine-binding protein FliY compare
Pf6N2E2_4658 -0.7 -3.6 FIG00955006: hypothetical protein compare
Pf6N2E2_3847 -0.7 -1.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_624 -0.7 -2.9 hypothetical protein PA3071 compare
Pf6N2E2_1512 -0.7 -1.7 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_1136 -0.7 -1.0 Transcriptional regulator, TetR family compare
Pf6N2E2_1404 -0.7 -2.2 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_3055 -0.7 -2.2 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_3702 -0.7 -2.4 FIG00953907: hypothetical protein compare
Pf6N2E2_2827 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_3033 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_2792 -0.7 -1.9 Antitoxin 1 compare
Pf6N2E2_1824 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_1968 -0.7 -2.4 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_1443 -0.7 -2.2 putative aldo/keto reductase compare
Pf6N2E2_871 -0.7 -3.2 sensor histidine kinase compare
Pf6N2E2_2749 -0.7 -3.1 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
Pf6N2E2_2397 -0.7 -2.2 Two-component system response regulator QseB compare
Pf6N2E2_2586 -0.7 -1.4 Hpt domain protein compare
Pf6N2E2_2835 -0.7 -2.0 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_4417 -0.7 -2.0 Protein of unknown function DUF484 compare
Pf6N2E2_5728 -0.7 -2.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_625 -0.7 -2.9 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_4077 -0.6 -1.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_288 -0.6 -0.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5425 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_2940 -0.6 -2.8 OmpA family protein compare
Pf6N2E2_2822 -0.6 -3.5 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2180 -0.6 -1.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3258 -0.6 -2.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_1806 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_339 -0.6 -1.9 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_2121 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_3204 -0.6 -1.3 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_2267 -0.6 -2.3 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_3039 -0.6 -3.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_924 -0.6 -1.8 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_5647 -0.6 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_5727 -0.6 -2.8 FIG00955360: hypothetical protein compare
Pf6N2E2_3539 -0.6 -1.8 FIG00955840: hypothetical protein compare
Pf6N2E2_2261 -0.6 -3.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_39 -0.6 -2.8 FIG00857858: hypothetical protein compare
Pf6N2E2_3192 -0.6 -1.8 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_3920 -0.6 -4.5 Cystine ABC transporter, permease protein compare
Pf6N2E2_1147 -0.6 -1.7 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_1081 -0.6 -1.2 probable membrane protein YPO3302 compare
Pf6N2E2_3856 -0.6 -3.3 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_3667 -0.6 -0.7 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2111 -0.6 -1.9 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_384 -0.6 -1.2 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2309 -0.6 -1.9 hypothetical protein compare
Pf6N2E2_433 -0.6 -1.9 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
Pf6N2E2_3151 -0.6 -1.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4418 -0.6 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2258 -0.6 -3.5 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3370 -0.6 -4.1 DNA repair protein RecN compare
Pf6N2E2_3617 -0.6 -2.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1805 -0.6 -2.4 Multidrug resistance protein B compare
Pf6N2E2_238 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_3738 -0.6 -1.8 General secretion pathway protein L compare
Pf6N2E2_155 -0.6 -1.7 Probable transmembrane protein compare
Pf6N2E2_5300 -0.6 -4.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2112 -0.6 -2.4 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) compare
Pf6N2E2_3505 -0.6 -1.0 Translation initiation factor SUI1-related protein compare
Pf6N2E2_2340 -0.6 -2.0 Transcriptional regulator, GntR family compare
Pf6N2E2_5406 -0.6 -1.4 FIG00958224: hypothetical protein compare
Pf6N2E2_6090 -0.6 -1.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_64 -0.6 -1.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_968 -0.6 -1.8 FIG00962395: hypothetical protein compare
Pf6N2E2_1032 -0.5 -0.8 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_3534 -0.5 -1.3 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_4187 -0.5 -2.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3839 -0.5 -1.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5013 -0.5 -1.1 Putative membrane protein compare
Pf6N2E2_3521 -0.5 -3.4 Sensor histidine kinase/response regulator compare
Pf6N2E2_4279 -0.5 -3.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_622 -0.5 -1.7 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_1740 -0.5 -2.0 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_5677 -0.5 -0.9 Carbon storage regulator compare
Pf6N2E2_1131 -0.5 -1.8 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_3666 -0.5 -1.7 InaA protein compare
Pf6N2E2_2218 -0.5 -1.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_1838 -0.5 -1.6 6-hexanolactone hydrolase compare
Pf6N2E2_3841 -0.5 -2.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4703 -0.5 -2.4 hypothetical protein compare
Pf6N2E2_5671 -0.5 -1.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_621 -0.5 -2.5 TPR domain protein in aerotolerance operon compare
Pf6N2E2_2630 -0.5 -2.7 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
Pf6N2E2_5669 -0.5 -2.9 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_4984 -0.5 -1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_204 -0.5 -0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Sodium perchlorate monohydrate across organisms