Experiment setAIT058 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium perchlorate monohydrate 0.00625 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.3 -6.3 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4353 -3.7 -6.4 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4352 -3.2 -4.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4204 -2.6 -2.3 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_1056 -2.1 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5014 -2.0 -2.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5156 -1.9 -3.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3134 -1.9 -1.8 hypothetical protein compare
Pf6N2E2_4153 -1.9 -2.5 Sensory box histidine kinase compare
Pf6N2E2_5527 -1.9 -2.8 Cold shock protein CspC compare
Pf6N2E2_5705 -1.8 -1.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4803 -1.8 -2.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3461 -1.8 -1.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3351 -1.8 -4.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2181 -1.8 -2.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5155 -1.7 -4.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2127 -1.7 -4.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3607 -1.7 -6.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3460 -1.6 -2.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3303 -1.6 -4.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4162 -1.5 -3.7 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5316 -1.4 -2.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3908 -1.4 -6.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4372 -1.4 -5.1 FIG00460773: hypothetical protein compare
Pf6N2E2_4886 -1.3 -8.5 Catalase (EC 1.11.1.6) compare
Pf6N2E2_5430 -1.3 -7.0 Transglycosylase, Slt family compare
Pf6N2E2_5425 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_2586 -1.3 -2.3 Hpt domain protein compare
Pf6N2E2_1545 -1.2 -4.2 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5069 -1.2 -5.0 putative Cytochrome bd2, subunit II compare
Pf6N2E2_4416 -1.2 -3.0 Tyrosine recombinase XerC compare
Pf6N2E2_3665 -1.2 -1.1 serine/threonine protein kinase compare
Pf6N2E2_2325 -1.2 -4.9 Recombination protein RecR compare
Pf6N2E2_2465 -1.1 -4.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_629 -1.1 -3.7 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_3786 -1.1 -3.2 Twin-arginine translocation protein TatC compare
Pf6N2E2_43 -1.1 -5.0 Histidine permease YuiF compare
Pf6N2E2_4454 -1.1 -3.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2967 -1.1 -2.3 Cold shock protein CspA compare
Pf6N2E2_624 -1.1 -4.0 hypothetical protein PA3071 compare
Pf6N2E2_2012 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_5068 -1.0 -6.8 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5339 -1.0 -4.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_1502 -1.0 -2.0 Two-component system regulatory protein compare
Pf6N2E2_4710 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_2448 -1.0 -3.4 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_2010 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_2311 -1.0 -5.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5337 -1.0 -2.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_621 -0.9 -5.0 TPR domain protein in aerotolerance operon compare
Pf6N2E2_1032 -0.9 -1.3 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_2646 -0.9 -1.4 FIG00953416: hypothetical protein compare
Pf6N2E2_2310 -0.9 -6.1 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4057 -0.9 -1.0 lipoprotein, putative compare
Pf6N2E2_1147 -0.9 -2.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_5428 -0.9 -4.7 DNA recombination and repair protein RecO compare
Pf6N2E2_189 -0.9 -2.8 regulatory protein, putative compare
Pf6N2E2_1116 -0.9 -1.5 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_2984 -0.9 -2.3 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_2313 -0.9 -2.4 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2880 -0.9 -2.6 FIG00959696: hypothetical protein compare
Pf6N2E2_5633 -0.8 -6.8 Aromatic amino acid transport protein AroP compare
Pf6N2E2_3192 -0.8 -2.8 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_5841 -0.8 -1.0 GlcG protein compare
Pf6N2E2_693 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_622 -0.8 -2.3 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5508 -0.8 -0.8 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_5338 -0.8 -4.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4638 -0.8 -2.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4197 -0.8 -4.6 DNA recombination and repair protein RecF compare
Pf6N2E2_2126 -0.8 -3.8 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_1596 -0.8 -0.9 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_2218 -0.8 -2.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3499 -0.8 -2.5 Permeases of the major facilitator superfamily compare
Pf6N2E2_2588 -0.8 -1.9 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2217 -0.8 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4187 -0.8 -2.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2708 -0.8 -3.6 Lactam utilization protein LamB compare
Pf6N2E2_5520 -0.8 -3.9 Sensory box histidine kinase compare
Pf6N2E2_5677 -0.8 -1.2 Carbon storage regulator compare
Pf6N2E2_4418 -0.8 -0.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3096 -0.7 -1.1 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3612 -0.7 -1.2 HflK protein compare
Pf6N2E2_3264 -0.7 -2.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4417 -0.7 -2.3 Protein of unknown function DUF484 compare
Pf6N2E2_282 -0.7 -1.3 GNAT family acetyltransferase YjcF compare
Pf6N2E2_2714 -0.7 -1.7 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_3617 -0.7 -3.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1469 -0.7 -2.4 NAD-dependent formate dehydrogenase gamma subunit compare
Pf6N2E2_1504 -0.7 -1.8 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_2440 -0.7 -1.2 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_21 -0.7 -1.7 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf6N2E2_625 -0.7 -2.2 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3537 -0.7 -2.7 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_3258 -0.7 -2.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_1656 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_178 -0.7 -1.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_660 -0.7 -2.3 hypothetical protein compare
Pf6N2E2_1508 -0.7 -1.7 DNA-binding response regulator compare
Pf6N2E2_620 -0.7 -3.9 BatD compare
Pf6N2E2_2309 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_2549 -0.7 -0.8 hypothetical protein compare
Pf6N2E2_4601 -0.7 -1.0 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2340 -0.7 -2.8 Transcriptional regulator, GntR family compare
Pf6N2E2_4369 -0.7 -1.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3573 -0.7 -2.6 HupE-UreJ family metal transporter compare
Pf6N2E2_40 -0.7 -3.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3531 -0.6 -2.8 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3204 -0.6 -1.3 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_2025 -0.6 -3.8 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_2420 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_4612 -0.6 -2.4 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_300 -0.6 -1.6 CrcB protein compare
Pf6N2E2_3841 -0.6 -2.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3373 -0.6 -1.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_698 -0.6 -1.7 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_70 -0.6 -2.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3183 -0.6 -1.4 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_4165 -0.6 -2.7 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf6N2E2_640 -0.6 -1.2 Outer membrane TonB-dependent transducer VreA of trans-envelope signaling system compare
Pf6N2E2_1089 -0.6 -1.1 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_2124 -0.6 -1.2 Mg(2+) transport ATPase protein C compare
Pf6N2E2_770 -0.6 -2.5 Ribosylnicotinamide kinase (EC 2.7.1.22) compare
Pf6N2E2_2318 -0.6 -3.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3534 -0.6 -1.3 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_1276 -0.6 -3.1 FIG00958406: hypothetical protein compare
Pf6N2E2_1606 -0.6 -2.2 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_3039 -0.6 -3.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5967 -0.6 -1.5 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_4159 -0.6 -2.0 Cytochrome c4 compare
Pf6N2E2_3521 -0.6 -3.5 Sensor histidine kinase/response regulator compare
Pf6N2E2_1972 -0.6 -1.6 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_4541 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_2073 -0.6 -2.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2571 -0.6 -2.3 Chemotaxis response - phosphatase CheZ compare
Pf6N2E2_5246 -0.6 -2.3 FIG00955938: hypothetical protein compare
Pf6N2E2_4075 -0.6 -2.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3300 -0.6 -1.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_28 -0.6 -1.8 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_2833 -0.6 -3.0 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf6N2E2_122 -0.6 -1.3 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_751 -0.6 -2.5 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_2632 -0.6 -3.4 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Pf6N2E2_5740 -0.6 -2.6 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_1876 -0.6 -1.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_563 -0.6 -3.4 Serine transporter compare
Pf6N2E2_4673 -0.6 -2.1 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_968 -0.6 -2.4 FIG00962395: hypothetical protein compare
Pf6N2E2_5869 -0.6 -1.6 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_3919 -0.6 -3.8 Cystine ABC transporter, periplasmic cystine-binding protein FliY compare
Pf6N2E2_234 -0.6 -1.9 FIG00454312: hypothetical protein compare
Pf6N2E2_831 -0.6 -0.8 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_2424 -0.6 -2.1 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_613 -0.6 -1.0 lipoprotein, putative compare
Pf6N2E2_855 -0.6 -1.9 Transcriptional regulator, IclR family compare
Pf6N2E2_3328 -0.6 -1.0 transcriptional regulator compare
Pf6N2E2_453 -0.6 -1.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_5584 -0.6 -1.7 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_1335 -0.6 -1.5 Phospholipid-binding protein compare
Pf6N2E2_5320 -0.6 -3.0 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_4611 -0.5 -1.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_384 -0.5 -0.9 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4168 -0.5 -2.2 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_3720 -0.5 -1.0 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3370 -0.5 -3.7 DNA repair protein RecN compare
Pf6N2E2_3201 -0.5 -1.6 Transcriptional regulator, MerR family compare
Pf6N2E2_1835 -0.5 -2.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_99 -0.5 -2.1 hypothetical protein compare
Pf6N2E2_238 -0.5 -1.0 hypothetical protein compare
Pf6N2E2_5632 -0.5 -1.7 Aromatic amino acid transport protein AroP compare
Pf6N2E2_5226 -0.5 -1.1 FIG00955589: hypothetical protein compare
Pf6N2E2_2546 -0.5 -1.5 Carbon storage regulator compare
Pf6N2E2_5605 -0.5 -1.7 FxsA protein compare
Pf6N2E2_3251 -0.5 -3.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2021 -0.5 -3.2 Excinuclease ABC subunit C compare
Pf6N2E2_4146 -0.5 -1.2 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_292 -0.5 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_4167 -0.5 -2.9 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf6N2E2_5668 -0.5 -1.8 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_1758 -0.5 -0.8 Transcriptional regulator, MarR family compare
Pf6N2E2_447 -0.5 -1.7 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_1029 -0.5 -2.5 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
Pf6N2E2_4205 -0.5 -1.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5453 -0.5 -1.9 hypothetical protein compare
Pf6N2E2_5236 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_945 -0.5 -1.0 Transcriptional regulator, TetR family compare
Pf6N2E2_1694 -0.5 -0.8 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2753 -0.5 -1.4 HtrA protease/chaperone protein compare
Pf6N2E2_4338 -0.5 -1.8 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_1774 -0.5 -0.7 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_1423 -0.5 -2.6 Gamma-aminobutyrate permease compare
Pf6N2E2_4381 -0.5 -1.6 hypothetical protein compare
Pf6N2E2_663 -0.5 -2.0 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_726 -0.5 -1.3 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
Pf6N2E2_1599 -0.5 -2.0 Cytochrome c-type protein NapC compare
Pf6N2E2_1566 -0.5 -2.0 FIG00960770: hypothetical protein compare
Pf6N2E2_1199 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_1974 -0.5 -2.4 FIG141694: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_6060 -0.5 -1.5 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_3911 -0.5 -1.8 Taurine transport system permease protein TauC compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Sodium perchlorate monohydrate across organisms