Experiment setAIT057 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with DEANONOate 0.000625 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4353 -7.5 -5.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_16 -5.9 -1.6 hypothetical protein compare
Pf6N2E2_5320 -5.4 -10.4 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_623 -5.2 -1.4 FIG00954674: hypothetical protein compare
Pf6N2E2_5014 -5.2 -1.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4077 -5.2 -2.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5317 -5.1 -15.7 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_5319 -5.1 -10.8 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_2127 -5.0 -5.9 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3351 -5.0 -3.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2129 -4.9 -4.5 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3171 -4.7 -1.3 hypothetical protein compare
Pf6N2E2_5321 -4.7 -11.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_4418 -4.4 -1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4206 -4.3 -1.9 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5406 -4.2 -2.7 FIG00958224: hypothetical protein compare
Pf6N2E2_5318 -4.2 -20.6 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_5527 -4.2 -2.4 Cold shock protein CspC compare
Pf6N2E2_4057 -4.1 -1.1 lipoprotein, putative compare
Pf6N2E2_5068 -4.1 -12.8 putative Cytochrome bd2, subunit I compare
Pf6N2E2_447 -4.1 -5.5 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_2217 -4.1 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4416 -4.0 -3.9 Tyrosine recombinase XerC compare
Pf6N2E2_2507 -3.9 -8.5 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3941 -3.9 -3.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3589 -3.9 -2.0 Lysine decarboxylase family compare
Pf6N2E2_5069 -3.8 -5.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_962 -3.8 -2.1 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_4071 -3.8 -3.9 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3460 -3.8 -2.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4352 -3.7 -4.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3612 -3.7 -2.5 HflK protein compare
Pf6N2E2_5015 -3.6 -6.7 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_2586 -3.6 -2.4 Hpt domain protein compare
Pf6N2E2_1617 -3.6 -1.3 COG2199: FOG: GGDEF domain compare
Pf6N2E2_4204 -3.6 -1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4733 -3.5 -1.3 hypothetical protein compare
Pf6N2E2_5178 -3.5 -2.3 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4068 -3.4 -8.8 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_4464 -3.2 -3.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_4162 -3.2 -3.4 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5242 -3.2 -2.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2200 -3.2 -1.2 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_4072 -3.1 -5.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2218 -3.1 -5.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2872 -3.1 -9.7 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_3667 -3.1 -1.4 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2219 -3.1 -2.3 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3095 -3.0 -1.1 hypothetical protein compare
Pf6N2E2_2258 -3.0 -7.5 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3258 -3.0 -6.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3062 -3.0 -4.4 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5331 -3.0 -7.0 ATPase, AFG1 family compare
Pf6N2E2_2074 -3.0 -1.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2508 -2.9 -4.9 hypothetical protein compare
Pf6N2E2_3607 -2.9 -8.8 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5555 -2.9 -1.5 Cold shock protein CspA compare
Pf6N2E2_2999 -2.8 -3.1 probable tail fiber assembly protein compare
Pf6N2E2_3283 -2.8 -5.0 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_2282 -2.7 -3.0 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2756 -2.7 -6.0 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4054 -2.7 -2.2 Osmotically inducible protein C compare
Pf6N2E2_2440 -2.7 -1.4 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_3480 -2.7 -1.4 Transcriptional regulator, ArsR family compare
Pf6N2E2_3833 -2.6 -4.7 hypothetical protein compare
Pf6N2E2_5571 -2.6 -2.2 hypothetical protein compare
Pf6N2E2_6140 -2.6 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2088 -2.6 -1.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_4369 -2.6 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3942 -2.6 -5.9 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_622 -2.6 -3.5 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3505 -2.6 -1.4 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5155 -2.6 -4.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5430 -2.6 -8.4 Transglycosylase, Slt family compare
Pf6N2E2_4372 -2.5 -6.0 FIG00460773: hypothetical protein compare
Pf6N2E2_3303 -2.5 -4.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3257 -2.5 -4.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1875 -2.4 -2.9 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_4641 -2.4 -7.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2510 -2.4 -3.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2973 -2.4 -5.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5219 -2.4 -6.7 FIG140336: TPR domain protein compare
Pf6N2E2_5103 -2.4 -1.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2940 -2.3 -5.6 OmpA family protein compare
Pf6N2E2_3260 -2.3 -3.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2447 -2.3 -6.8 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3432 -2.3 -3.8 Ais protein, putative compare
Pf6N2E2_413 -2.3 -2.2 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_2059 -2.3 -2.4 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_4678 -2.2 -0.8 hypothetical protein compare
Pf6N2E2_4499 -2.2 -2.0 protein of unknown function DUF86 compare
Pf6N2E2_2386 -2.2 -3.1 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_5943 -2.2 -1.6 hypothetical protein compare
Pf6N2E2_2278 -2.2 -10.5 Transcription-repair coupling factor compare
Pf6N2E2_3300 -2.2 -2.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3326 -2.2 -1.5 hypothetical protein compare
Pf6N2E2_5843 -2.2 -1.8 hypothetical protein compare
Pf6N2E2_55 -2.2 -1.9 Probable hydrolase compare
Pf6N2E2_2694 -2.1 -5.1 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) compare
Pf6N2E2_1545 -2.1 -4.6 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2473 -2.1 -1.1 Major outer membrane lipoprotein I compare
Pf6N2E2_5150 -2.1 -3.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1774 -2.1 -1.7 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_4982 -2.1 -3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_5255 -2.1 -6.0 Outer membrane stress sensor protease DegS compare
Pf6N2E2_818 -2.0 -4.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_1966 -2.0 -2.0 SAM-dependent methyltransferases compare
Pf6N2E2_2967 -2.0 -1.8 Cold shock protein CspA compare
Pf6N2E2_1056 -2.0 -0.7 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5987 -2.0 -3.7 OmpA family protein compare
Pf6N2E2_2381 -2.0 -3.4 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3666 -1.9 -2.7 InaA protein compare
Pf6N2E2_2574 -1.9 -1.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_43 -1.9 -4.7 Histidine permease YuiF compare
Pf6N2E2_2261 -1.9 -5.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_2073 -1.9 -6.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2126 -1.9 -5.4 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_493 -1.9 -2.7 YD repeat protein compare
Pf6N2E2_5523 -1.9 -2.1 Small-conductance mechanosensitive channel compare
Pf6N2E2_3908 -1.9 -6.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5727 -1.8 -5.3 FIG00955360: hypothetical protein compare
Pf6N2E2_3192 -1.8 -4.1 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_5188 -1.8 -3.5 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5986 -1.8 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4168 -1.8 -4.2 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_2390 -1.8 -2.5 FIG00959101: hypothetical protein compare
Pf6N2E2_156 -1.8 -1.6 Carbon storage regulator compare
Pf6N2E2_4073 -1.8 -3.6 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_1797 -1.8 -1.9 Transcriptional regulator compare
Pf6N2E2_4276 -1.8 -3.7 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4423 -1.8 -1.8 FIG00953342: hypothetical protein compare
Pf6N2E2_3835 -1.8 -1.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_971 -1.8 -2.2 hypothetical protein compare
Pf6N2E2_1932 -1.8 -3.8 Transcriptional regulator, IclR family compare
Pf6N2E2_659 -1.8 -2.1 Transcriptional regulatory protein ompR compare
Pf6N2E2_3872 -1.7 -2.3 hypothetical protein compare
Pf6N2E2_2340 -1.7 -3.2 Transcriptional regulator, GntR family compare
Pf6N2E2_1403 -1.7 -2.4 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_3770 -1.7 -1.5 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_1032 -1.7 -1.0 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_142 -1.7 -2.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_1089 -1.7 -1.2 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_4773 -1.7 -1.0 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1596 -1.7 -1.4 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_4438 -1.7 -2.4 hypothetical protein compare
Pf6N2E2_2003 -1.7 -2.1 hypothetical protein compare
Pf6N2E2_3461 -1.7 -0.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2438 -1.7 -1.3 hypothetical protein compare
Pf6N2E2_815 -1.7 -4.6 Signal transduction histidine kinase compare
Pf6N2E2_942 -1.7 -1.5 Mll6465 protein compare
Pf6N2E2_5816 -1.7 -1.5 Smr domain protein compare
Pf6N2E2_3762 -1.7 -4.2 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_5780 -1.6 -4.8 Periplasmic protease compare
Pf6N2E2_3876 -1.6 -2.4 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_4908 -1.6 -5.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3204 -1.6 -1.5 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_4439 -1.6 -4.6 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_813 -1.6 -2.8 Response regulator compare
Pf6N2E2_1281 -1.6 -2.6 ATPase involved in DNA repair compare
Pf6N2E2_2071 -1.6 -2.0 hypothetical protein compare
Pf6N2E2_6031 -1.6 -2.5 hypothetical protein compare
Pf6N2E2_304 -1.6 -1.5 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_248 -1.6 -4.6 hypothetical protein compare
Pf6N2E2_2013 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_5722 -1.6 -3.6 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf6N2E2_2121 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_621 -1.5 -5.1 TPR domain protein in aerotolerance operon compare
Pf6N2E2_2325 -1.5 -3.0 Recombination protein RecR compare
Pf6N2E2_816 -1.5 -3.1 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_939 -1.5 -2.0 hypothetical protein compare
Pf6N2E2_4984 -1.5 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_855 -1.5 -2.7 Transcriptional regulator, IclR family compare
Pf6N2E2_2984 -1.5 -1.4 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_5714 -1.5 -2.1 Flavoprotein WrbA compare
Pf6N2E2_1584 -1.5 -2.2 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_3603 -1.5 -4.6 FIG003573: hypothetical protein compare
Pf6N2E2_3569 -1.5 -1.7 hypothetical protein compare
Pf6N2E2_3885 -1.5 -2.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_4886 -1.5 -5.5 Catalase (EC 1.11.1.6) compare
Pf6N2E2_3504 -1.5 -6.4 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_5001 -1.5 -1.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3542 -1.5 -8.7 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_5536 -1.5 -1.6 Holliday junction DNA helicase RuvA compare
Pf6N2E2_961 -1.4 -1.7 FIG00954712: hypothetical protein compare
Pf6N2E2_5476 -1.4 -1.5 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_4092 -1.4 -1.9 FIG00954395: hypothetical protein compare
Pf6N2E2_1034 -1.4 -0.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_624 -1.4 -2.5 hypothetical protein PA3071 compare
Pf6N2E2_5723 -1.4 -3.4 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_601 -1.4 -2.0 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_5448 -1.4 -3.9 hypothetical protein compare
Pf6N2E2_161 -1.4 -2.6 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_469 -1.4 -1.4 lipoprotein, putative compare
Pf6N2E2_3611 -1.4 -0.8 HflC protein compare
Pf6N2E2_4152 -1.4 -3.8 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_625 -1.4 -3.1 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_1779 -1.3 -1.9 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_1968 -1.3 -2.2 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_4928 -1.3 -1.0 Permeases of the major facilitator superfamily compare
Pf6N2E2_5182 -1.3 -3.8 Paraquat-inducible protein A compare


Specific Phenotypes

For 9 genes in this experiment

For stress DEANONOate in Pseudomonas fluorescens FW300-N2E2

For stress DEANONOate across organisms