Experiment setAIT056 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with DEANONOate 0.000625 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4353 -7.8 -5.4 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5321 -5.4 -12.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2129 -5.4 -4.8 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4077 -5.4 -2.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5320 -5.4 -11.5 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_5014 -5.4 -1.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5785 -5.3 -3.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3062 -5.1 -6.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2217 -5.0 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3397 -5.0 -4.1 Phage protein compare
Pf6N2E2_5319 -4.9 -11.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_4416 -4.8 -3.3 Tyrosine recombinase XerC compare
Pf6N2E2_3941 -4.6 -3.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2127 -4.6 -7.0 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4418 -4.5 -1.3 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5318 -4.5 -22.3 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_3942 -4.5 -13.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5527 -4.4 -2.8 Cold shock protein CspC compare
Pf6N2E2_6140 -4.3 -1.2 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2756 -4.3 -10.3 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4072 -4.2 -5.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5015 -4.2 -6.0 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_3607 -4.1 -12.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2258 -4.1 -10.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3461 -4.1 -2.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5069 -4.0 -7.4 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3460 -4.0 -2.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2507 -3.9 -7.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5317 -3.9 -13.6 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_3475 -3.8 -2.4 hypothetical protein compare
Pf6N2E2_4204 -3.8 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5178 -3.7 -2.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5068 -3.7 -11.8 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2872 -3.6 -10.8 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_5536 -3.6 -2.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4068 -3.6 -14.0 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_413 -3.5 -3.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_3770 -3.5 -3.2 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4352 -3.5 -4.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5727 -3.4 -7.4 FIG00955360: hypothetical protein compare
Pf6N2E2_3611 -3.3 -1.6 HflC protein compare
Pf6N2E2_3667 -3.3 -1.6 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4797 -3.2 -1.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3134 -3.2 -1.3 hypothetical protein compare
Pf6N2E2_5425 -3.2 -1.3 hypothetical protein compare
Pf6N2E2_4369 -3.2 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3876 -3.1 -5.4 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_2675 -3.1 -1.2 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2447 -3.0 -5.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4743 -3.0 -1.2 hypothetical protein compare
Pf6N2E2_2967 -2.9 -1.8 Cold shock protein CspA compare
Pf6N2E2_3283 -2.9 -6.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_5508 -2.8 -2.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_5219 -2.8 -8.6 FIG140336: TPR domain protein compare
Pf6N2E2_5430 -2.8 -9.2 Transglycosylase, Slt family compare
Pf6N2E2_3666 -2.7 -4.0 InaA protein compare
Pf6N2E2_3612 -2.7 -3.2 HflK protein compare
Pf6N2E2_2973 -2.7 -5.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_622 -2.7 -5.1 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5086 -2.7 -1.3 hypothetical protein compare
Pf6N2E2_3258 -2.6 -6.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4541 -2.6 -1.3 hypothetical protein compare
Pf6N2E2_5150 -2.6 -4.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2126 -2.6 -6.8 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_5103 -2.6 -1.4 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2536 -2.5 -2.0 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_5331 -2.5 -6.2 ATPase, AFG1 family compare
Pf6N2E2_170 -2.4 -2.3 lipoprotein, putative compare
Pf6N2E2_3835 -2.4 -3.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4162 -2.4 -3.6 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_447 -2.4 -5.7 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_3257 -2.4 -3.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5723 -2.3 -6.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5155 -2.3 -3.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_142 -2.3 -4.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4075 -2.3 -5.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3505 -2.2 -1.5 Translation initiation factor SUI1-related protein compare
Pf6N2E2_3303 -2.2 -3.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2282 -2.2 -3.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2646 -2.2 -1.5 FIG00953416: hypothetical protein compare
Pf6N2E2_2940 -2.2 -4.2 OmpA family protein compare
Pf6N2E2_2218 -2.2 -4.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3351 -2.2 -4.0 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_1040 -2.2 -2.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5342 -2.1 -2.9 21 kDa hemolysin precursor compare
Pf6N2E2_5188 -2.1 -4.4 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5340 -2.1 -4.5 Stringent starvation protein A compare
Pf6N2E2_3271 -2.1 -2.4 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4073 -2.1 -5.5 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_2827 -2.1 -1.2 hypothetical protein compare
Pf6N2E2_1056 -2.1 -0.8 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3260 -2.0 -5.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5605 -2.0 -2.3 FxsA protein compare
Pf6N2E2_623 -2.0 -1.4 FIG00954674: hypothetical protein compare
Pf6N2E2_4517 -2.0 -2.7 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_4272 -2.0 -2.3 putative membrane protein compare
Pf6N2E2_4276 -2.0 -4.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_6022 -2.0 -2.3 StbE replicon stabilization toxin compare
Pf6N2E2_819 -2.0 -2.4 Response regulator compare
Pf6N2E2_43 -2.0 -4.7 Histidine permease YuiF compare
Pf6N2E2_2487 -2.0 -0.9 FIG00956090: hypothetical protein compare
Pf6N2E2_1932 -2.0 -3.2 Transcriptional regulator, IclR family compare
Pf6N2E2_4438 -1.9 -3.1 hypothetical protein compare
Pf6N2E2_2219 -1.9 -2.2 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2261 -1.9 -6.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_3074 -1.9 -1.6 FIG00960973: hypothetical protein compare
Pf6N2E2_5739 -1.9 -1.2 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_1652 -1.9 -2.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2278 -1.9 -10.6 Transcription-repair coupling factor compare
Pf6N2E2_2510 -1.8 -3.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3603 -1.8 -5.5 FIG003573: hypothetical protein compare
Pf6N2E2_2514 -1.8 -2.9 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2488 -1.8 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2325 -1.8 -4.7 Recombination protein RecR compare
Pf6N2E2_3727 -1.8 -3.2 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_1074 -1.8 -2.7 FIG00953356: hypothetical protein compare
Pf6N2E2_4063 -1.8 -2.8 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf6N2E2_5001 -1.8 -2.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_624 -1.7 -3.8 hypothetical protein PA3071 compare
Pf6N2E2_5261 -1.7 -1.1 FIG00956983: hypothetical protein compare
Pf6N2E2_4152 -1.7 -4.3 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_1099 -1.7 -1.9 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_5560 -1.7 -3.5 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_4886 -1.7 -6.1 Catalase (EC 1.11.1.6) compare
Pf6N2E2_4641 -1.7 -4.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_818 -1.7 -3.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_425 -1.7 -3.1 FIG00957304: hypothetical protein compare
Pf6N2E2_4372 -1.7 -4.1 FIG00460773: hypothetical protein compare
Pf6N2E2_5768 -1.7 -3.5 DNA recombination-dependent growth factor C compare
Pf6N2E2_4160 -1.6 -1.0 Cytochrome c5 compare
Pf6N2E2_424 -1.6 -3.8 Decarboxylase family protein compare
Pf6N2E2_2386 -1.6 -3.8 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_1545 -1.6 -4.0 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4205 -1.6 -3.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5825 -1.6 -3.7 FIG00958237: hypothetical protein compare
Pf6N2E2_3568 -1.6 -2.3 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_5646 -1.6 -1.5 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_2189 -1.6 -4.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3658 -1.6 -3.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4545 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_5242 -1.6 -2.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4599 -1.6 -2.1 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5006 -1.6 -4.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4417 -1.6 -3.2 Protein of unknown function DUF484 compare
Pf6N2E2_813 -1.6 -3.0 Response regulator compare
Pf6N2E2_4071 -1.6 -4.3 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_84 -1.6 -1.2 hypothetical protein compare
Pf6N2E2_5987 -1.6 -3.4 OmpA family protein compare
Pf6N2E2_1596 -1.5 -1.7 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5182 -1.5 -5.4 Paraquat-inducible protein A compare
Pf6N2E2_3908 -1.5 -5.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5111 -1.5 -1.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_1617 -1.5 -1.1 COG2199: FOG: GGDEF domain compare
Pf6N2E2_2694 -1.5 -5.3 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) compare
Pf6N2E2_3659 -1.5 -3.2 Protein fixF compare
Pf6N2E2_4391 -1.5 -3.6 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_3762 -1.5 -4.8 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_2073 -1.5 -4.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_6045 -1.5 -1.1 hypothetical protein compare
Pf6N2E2_601 -1.5 -3.0 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_4362 -1.5 -1.3 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_449 -1.5 -2.9 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_1502 -1.5 -1.9 Two-component system regulatory protein compare
Pf6N2E2_4197 -1.5 -6.8 DNA recombination and repair protein RecF compare
Pf6N2E2_2340 -1.4 -3.7 Transcriptional regulator, GntR family compare
Pf6N2E2_1239 -1.4 -4.0 Putative TEGT family carrier/transport protein compare
Pf6N2E2_5312 -1.4 -1.9 FIG00964214: hypothetical protein compare
Pf6N2E2_1283 -1.4 -2.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3833 -1.4 -3.2 hypothetical protein compare
Pf6N2E2_5072 -1.4 -4.1 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) compare
Pf6N2E2_3542 -1.4 -8.7 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_2794 -1.4 -1.0 putative membrane protein compare
Pf6N2E2_4464 -1.4 -1.9 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_3122 -1.4 -1.8 Chemotaxis signal transduction protein compare
Pf6N2E2_1352 -1.4 -1.8 Cation transport ATPase compare
Pf6N2E2_5255 -1.4 -5.2 Outer membrane stress sensor protease DegS compare
Pf6N2E2_3661 -1.4 -2.6 hypothetical protein compare
Pf6N2E2_5676 -1.4 -3.2 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_4908 -1.4 -6.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4414 -1.4 -1.8 FIG00953808: hypothetical protein compare
Pf6N2E2_1534 -1.4 -1.2 Probable transmembrane protein compare
Pf6N2E2_2474 -1.4 -4.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_469 -1.3 -1.4 lipoprotein, putative compare
Pf6N2E2_5081 -1.3 -3.4 hypothetical protein compare
Pf6N2E2_2586 -1.3 -1.0 Hpt domain protein compare
Pf6N2E2_5523 -1.3 -3.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_2992 -1.3 -2.8 Regulatory protein RecX compare
Pf6N2E2_5049 -1.3 -1.6 acetyltransferase, GNAT family compare
Pf6N2E2_2508 -1.3 -2.8 hypothetical protein compare
Pf6N2E2_3642 -1.3 -4.5 lipoprotein, putative compare
Pf6N2E2_3504 -1.3 -6.0 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_4982 -1.3 -2.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_4146 -1.3 -2.1 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_1912 -1.3 -2.7 hypothetical protein compare
Pf6N2E2_3326 -1.3 -1.5 hypothetical protein compare
Pf6N2E2_621 -1.3 -4.5 TPR domain protein in aerotolerance operon compare
Pf6N2E2_923 -1.3 -1.1 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_816 -1.2 -3.9 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_928 -1.2 -1.7 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_3198 -1.2 -1.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare


Specific Phenotypes

For 6 genes in this experiment

For stress DEANONOate in Pseudomonas fluorescens FW300-N2E2

For stress DEANONOate across organisms