Experiment setAIT053 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cadmium chloride hemipentahydrate 0.000015625 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.0 -5.8 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5014 -5.3 -2.7 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4353 -4.5 -8.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3661 -4.3 -7.6 hypothetical protein compare
Pf6N2E2_4204 -3.9 -2.7 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4803 -3.9 -2.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5068 -3.8 -11.8 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5069 -3.7 -6.3 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3948 -3.6 -12.1 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3947 -3.5 -2.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_3611 -3.4 -2.3 HflC protein compare
Pf6N2E2_4416 -3.4 -4.6 Tyrosine recombinase XerC compare
Pf6N2E2_5527 -3.1 -3.0 Cold shock protein CspC compare
Pf6N2E2_4352 -3.1 -4.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_1147 -3.0 -4.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_3264 -2.9 -4.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4372 -2.8 -6.7 FIG00460773: hypothetical protein compare
Pf6N2E2_3303 -2.8 -7.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3659 -2.6 -5.5 Protein fixF compare
Pf6N2E2_5160 -2.6 -3.0 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4187 -2.4 -4.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3908 -2.2 -8.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4362 -2.1 -4.6 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2217 -2.1 -6.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1056 -2.1 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1545 -2.0 -5.6 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3617 -2.0 -6.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5430 -2.0 -10.1 Transglycosylase, Slt family compare
Pf6N2E2_3658 -2.0 -7.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2700 -2.0 -7.6 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_3461 -2.0 -2.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1509 -2.0 -3.7 FIG00450070: hypothetical protein compare
Pf6N2E2_5560 -1.9 -3.9 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_5536 -1.8 -2.7 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5406 -1.8 -2.9 FIG00958224: hypothetical protein compare
Pf6N2E2_3191 -1.8 -5.8 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_5242 -1.8 -2.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4454 -1.8 -5.0 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4162 -1.8 -3.0 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5103 -1.8 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_6064 -1.8 -6.9 2-methylaconitate isomerase compare
Pf6N2E2_4612 -1.7 -5.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3941 -1.7 -3.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5342 -1.7 -2.8 21 kDa hemolysin precursor compare
Pf6N2E2_2586 -1.7 -2.1 Hpt domain protein compare
Pf6N2E2_3842 -1.7 -5.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2188 -1.7 -4.9 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_3460 -1.6 -2.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5508 -1.6 -1.8 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3074 -1.6 -2.7 FIG00960973: hypothetical protein compare
Pf6N2E2_6140 -1.6 -1.5 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_178 -1.6 -1.9 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2473 -1.6 -1.8 Major outer membrane lipoprotein I compare
Pf6N2E2_5557 -1.5 -9.9 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
Pf6N2E2_3876 -1.5 -4.7 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5316 -1.5 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2189 -1.5 -5.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5006 -1.5 -7.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3260 -1.5 -5.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_625 -1.4 -4.3 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_5086 -1.4 -1.7 hypothetical protein compare
Pf6N2E2_622 -1.4 -3.4 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3607 -1.4 -6.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2506 -1.4 -9.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2509 -1.4 -3.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4531 -1.3 -2.0 hypothetical protein compare
Pf6N2E2_624 -1.3 -5.3 hypothetical protein PA3071 compare
Pf6N2E2_2384 -1.3 -3.6 CmpX compare
Pf6N2E2_3062 -1.3 -2.9 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3257 -1.3 -3.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_6090 -1.2 -2.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_2340 -1.2 -4.3 Transcriptional regulator, GntR family compare
Pf6N2E2_5703 -1.2 -5.0 outer membrane protein H1 compare
Pf6N2E2_1691 -1.2 -3.0 hypothetical protein compare
Pf6N2E2_3183 -1.2 -2.8 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_841 -1.2 -3.3 hypothetical protein compare
Pf6N2E2_2753 -1.2 -2.3 HtrA protease/chaperone protein compare
Pf6N2E2_3783 -1.2 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_1636 -1.2 -5.8 Ferrichrome-iron receptor compare
Pf6N2E2_2261 -1.2 -5.6 VacJ-like lipoprotein precursor compare
Pf6N2E2_6063 -1.2 -5.9 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3833 -1.2 -4.5 hypothetical protein compare
Pf6N2E2_2755 -1.1 -2.2 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3667 -1.1 -1.5 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2317 -1.1 -3.6 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5155 -1.1 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4541 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_4084 -1.1 -5.6 Transcriptional regulator compare
Pf6N2E2_144 -1.1 -8.7 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5188 -1.1 -3.6 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_16 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_4584 -1.1 -1.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5558 -1.1 -6.2 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) compare
Pf6N2E2_5727 -1.1 -3.8 FIG00955360: hypothetical protein compare
Pf6N2E2_2507 -1.0 -4.7 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_1932 -1.0 -4.0 Transcriptional regulator, IclR family compare
Pf6N2E2_304 -1.0 -2.5 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_5950 -1.0 -2.6 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_620 -1.0 -5.6 BatD compare
Pf6N2E2_145 -1.0 -6.0 putative exported protein compare
Pf6N2E2_3782 -1.0 -3.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_1606 -1.0 -4.3 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_3834 -1.0 -5.1 Lipoprotein NlpD compare
Pf6N2E2_2325 -1.0 -4.6 Recombination protein RecR compare
Pf6N2E2_3839 -1.0 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4451 -1.0 -4.9 FIG139438: lipoprotein B compare
Pf6N2E2_4360 -1.0 -6.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_3829 -1.0 -3.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_1081 -1.0 -2.0 probable membrane protein YPO3302 compare
Pf6N2E2_3326 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_2588 -0.9 -2.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_3612 -0.9 -1.7 HflK protein compare
Pf6N2E2_621 -0.9 -4.7 TPR domain protein in aerotolerance operon compare
Pf6N2E2_3253 -0.9 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4908 -0.9 -4.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4205 -0.9 -3.4 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4585 -0.9 -6.8 Cell division protein FtsX compare
Pf6N2E2_5943 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_2938 -0.9 -3.3 Outer membrane lipoprotein compare
Pf6N2E2_1248 -0.9 -2.2 MutT/nudix family protein compare
Pf6N2E2_5156 -0.9 -2.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3039 -0.9 -3.2 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_693 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_2285 -0.9 -1.5 FIG00954079: hypothetical protein compare
Pf6N2E2_5428 -0.9 -4.8 DNA recombination and repair protein RecO compare
Pf6N2E2_1699 -0.9 -2.0 FIG00955832: hypothetical protein compare
Pf6N2E2_946 -0.9 -2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_3021 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_1625 -0.9 -2.5 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3081 -0.9 -4.1 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_5679 -0.8 -4.1 hypothetical protein compare
Pf6N2E2_3847 -0.8 -1.7 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2756 -0.8 -4.3 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2073 -0.8 -4.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3132 -0.8 -2.4 FIG00954548: hypothetical protein compare
Pf6N2E2_2309 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_3261 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_2219 -0.8 -1.5 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_1173 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_5640 -0.8 -1.3 FIG00955597: hypothetical protein compare
Pf6N2E2_2574 -0.8 -1.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_6062 -0.8 -4.8 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_1896 -0.8 -2.5 hypothetical protein compare
Pf6N2E2_3085 -0.8 -2.2 FIG00954614: hypothetical protein compare
Pf6N2E2_5245 -0.8 -3.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2278 -0.8 -6.6 Transcription-repair coupling factor compare
Pf6N2E2_1502 -0.8 -2.1 Two-component system regulatory protein compare
Pf6N2E2_2218 -0.8 -2.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2682 -0.8 -2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_4155 -0.8 -4.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1626 -0.8 -3.7 Putative ATP-binding component of a transport system compare
Pf6N2E2_4821 -0.8 -3.5 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Pf6N2E2_5172 -0.8 -1.9 FOG: TPR repeat compare
Pf6N2E2_4181 -0.8 -1.1 Organic hydroperoxide resistance protein compare
Pf6N2E2_5291 -0.8 -6.7 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_5928 -0.7 -4.9 ABC-type multidrug transport system, permease component compare
Pf6N2E2_1009 -0.7 -1.9 Inositol transport system permease protein compare
Pf6N2E2_5972 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_2533 -0.7 -4.7 Rhodanese domain protein UPF0176 compare
Pf6N2E2_1673 -0.7 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3589 -0.7 -2.0 Lysine decarboxylase family compare
Pf6N2E2_3252 -0.7 -3.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_482 -0.7 -1.8 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_3610 -0.7 -2.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5292 -0.7 -3.9 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_4086 -0.7 -5.9 sodium/alanine transporter compare
Pf6N2E2_2518 -0.7 -2.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_238 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_2201 -0.7 -2.7 Transmembrane regulator protein PrtR compare
Pf6N2E2_1450 -0.7 -1.6 FIG00960438: hypothetical protein compare
Pf6N2E2_3521 -0.7 -4.1 Sensor histidine kinase/response regulator compare
Pf6N2E2_1352 -0.7 -1.3 Cation transport ATPase compare
Pf6N2E2_5704 -0.7 -3.7 Transcriptional regulatory protein PhoP compare
Pf6N2E2_1635 -0.7 -2.4 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_3351 -0.7 -2.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5605 -0.7 -2.3 FxsA protein compare
Pf6N2E2_4417 -0.7 -2.5 Protein of unknown function DUF484 compare
Pf6N2E2_1634 -0.7 -3.0 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_2310 -0.7 -4.4 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_6001 -0.7 -4.4 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_3014 -0.7 -1.6 P2-like prophage tail protein X compare
Pf6N2E2_502 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_4499 -0.7 -1.9 protein of unknown function DUF86 compare
Pf6N2E2_4159 -0.7 -2.4 Cytochrome c4 compare
Pf6N2E2_445 -0.7 -3.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_237 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_4700 -0.7 -2.5 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf6N2E2_5845 -0.7 -3.6 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_4464 -0.6 -1.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_5133 -0.6 -2.0 FIG00953980: hypothetical protein compare
Pf6N2E2_4059 -0.6 -0.8 DNA-binding protein HU-alpha compare
Pf6N2E2_2311 -0.6 -3.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_33 -0.6 -1.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3785 -0.6 -2.7 Twin-arginine translocation protein TatB compare
Pf6N2E2_3958 -0.6 -2.6 Putative stomatin/prohibitin-family membrane protease subunit aq_911 compare
Pf6N2E2_350 -0.6 -0.9 Gfa-like protein compare
Pf6N2E2_74 -0.6 -1.6 DedD protein compare
Pf6N2E2_2318 -0.6 -3.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3201 -0.6 -2.5 Transcriptional regulator, MerR family compare
Pf6N2E2_5846 -0.6 -4.6 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare


Specific Phenotypes

For 9 genes in this experiment

For stress Cadmium chloride hemipentahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Cadmium chloride hemipentahydrate across organisms