Experiment setAIT049 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Potassium chromate 0.0000015625 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4352 -4.9 -3.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3658 -4.6 -9.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3661 -4.4 -7.3 hypothetical protein compare
Pf6N2E2_302 -4.4 -8.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3461 -4.1 -2.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2073 -4.1 -9.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4004 -4.0 -10.3 Sulfate transport system permease protein CysT compare
Pf6N2E2_4187 -4.0 -6.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3191 -4.0 -6.1 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_5014 -3.9 -2.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4273 -3.7 -10.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_4825 -3.6 -10.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5832 -3.5 -14.2 Sulfate and thiosulfate binding protein CysP compare
Pf6N2E2_4162 -3.4 -4.1 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2021 -3.4 -12.7 Excinuclease ABC subunit C compare
Pf6N2E2_4003 -3.4 -8.0 Sulfate transport system permease protein CysW compare
Pf6N2E2_4416 -3.4 -4.6 Tyrosine recombinase XerC compare
Pf6N2E2_4002 -3.4 -11.5 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf6N2E2_3659 -3.3 -6.1 Protein fixF compare
Pf6N2E2_4005 -3.3 -5.2 hypothetical protein compare
Pf6N2E2_4369 -3.2 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5527 -3.2 -3.1 Cold shock protein CspC compare
Pf6N2E2_2700 -3.2 -6.7 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_5160 -3.1 -2.5 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5006 -3.1 -9.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3270 -2.9 -5.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_52 -2.9 -15.7 Excinuclease ABC subunit B compare
Pf6N2E2_4173 -2.9 -5.1 Methionine ABC transporter permease protein compare
Pf6N2E2_4612 -2.8 -7.1 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_6140 -2.8 -1.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4888 -2.8 -17.0 Excinuclease ABC subunit A compare
Pf6N2E2_3264 -2.7 -4.4 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2325 -2.6 -7.3 Recombination protein RecR compare
Pf6N2E2_2074 -2.6 -2.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4172 -2.6 -5.9 Methionine ABC transporter ATP-binding protein compare
Pf6N2E2_2071 -2.6 -4.4 hypothetical protein compare
Pf6N2E2_5150 -2.5 -7.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5258 -2.5 -10.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3792 -2.4 -7.1 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3919 -2.3 -10.0 Cystine ABC transporter, periplasmic cystine-binding protein FliY compare
Pf6N2E2_3885 -2.3 -3.4 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_3060 -2.2 -3.9 Outer membrane protein H precursor compare
Pf6N2E2_3920 -2.2 -13.2 Cystine ABC transporter, permease protein compare
Pf6N2E2_4579 -2.2 -3.9 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2506 -2.2 -12.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2219 -2.2 -2.8 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3261 -2.1 -5.5 hypothetical protein compare
Pf6N2E2_5257 -2.1 -7.5 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_5428 -2.0 -8.6 DNA recombination and repair protein RecO compare
Pf6N2E2_4206 -2.0 -2.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3791 -1.9 -8.1 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_4611 -1.9 -4.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5727 -1.9 -4.8 FIG00955360: hypothetical protein compare
Pf6N2E2_4197 -1.9 -7.9 DNA recombination and repair protein RecF compare
Pf6N2E2_1055 -1.9 -11.2 Transcriptional regulator MexT compare
Pf6N2E2_5523 -1.9 -4.7 Small-conductance mechanosensitive channel compare
Pf6N2E2_4353 -1.9 -7.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_145 -1.8 -8.5 putative exported protein compare
Pf6N2E2_5406 -1.8 -3.6 FIG00958224: hypothetical protein compare
Pf6N2E2_4556 -1.8 -3.9 FIG00953078: hypothetical protein compare
Pf6N2E2_4477 -1.8 -5.1 Z-ring-associated protein ZapA compare
Pf6N2E2_3941 -1.7 -3.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2129 -1.7 -5.9 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3908 -1.7 -7.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2072 -1.7 -4.9 hypothetical protein compare
Pf6N2E2_2473 -1.7 -1.8 Major outer membrane lipoprotein I compare
Pf6N2E2_2523 -1.7 -10.4 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Pf6N2E2_445 -1.7 -6.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_144 -1.7 -12.5 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4171 -1.7 -2.0 hypothetical protein compare
Pf6N2E2_3460 -1.7 -2.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2870 -1.6 -3.5 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_2508 -1.6 -4.4 hypothetical protein compare
Pf6N2E2_5242 -1.6 -2.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_825 -1.5 -9.3 Multidrug efflux membrane fusion protein MexE compare
Pf6N2E2_2507 -1.5 -5.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3835 -1.5 -2.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_446 -1.5 -7.6 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_3873 -1.5 -12.0 Outer membrane porin, OprD family compare
Pf6N2E2_4802 -1.5 -6.7 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) compare
Pf6N2E2_4454 -1.5 -5.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3664 -1.5 -6.3 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2746 -1.5 -6.8 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_2586 -1.5 -1.9 Hpt domain protein compare
Pf6N2E2_4908 -1.4 -6.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3349 -1.4 -2.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3833 -1.4 -3.5 hypothetical protein compare
Pf6N2E2_3258 -1.4 -4.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4372 -1.4 -4.0 FIG00460773: hypothetical protein compare
Pf6N2E2_2070 -1.4 -8.6 Periplasmic sugar-binding domain protein compare
Pf6N2E2_5430 -1.4 -5.8 Transglycosylase, Slt family compare
Pf6N2E2_2753 -1.4 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_4498 -1.4 -10.2 Outer membrane porin, OprD family compare
Pf6N2E2_824 -1.4 -10.5 Multidrug efflux transporter MexF compare
Pf6N2E2_5219 -1.3 -6.0 FIG140336: TPR domain protein compare
Pf6N2E2_5723 -1.3 -3.9 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_6077 -1.3 -6.8 Cysteine desulfurase (EC 2.8.1.7) compare
Pf6N2E2_923 -1.3 -2.0 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_2942 -1.3 -7.9 ATP-dependent helicase DinG/Rad3 compare
Pf6N2E2_5086 -1.3 -1.5 hypothetical protein compare
Pf6N2E2_3373 -1.3 -1.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5703 -1.3 -4.8 outer membrane protein H1 compare
Pf6N2E2_3303 -1.3 -3.0 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3665 -1.3 -1.1 serine/threonine protein kinase compare
Pf6N2E2_6001 -1.2 -6.0 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_5841 -1.2 -1.4 GlcG protein compare
Pf6N2E2_1056 -1.2 -1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_750 -1.2 -3.8 Transcriptional regulator, DeoR family compare
Pf6N2E2_2973 -1.2 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2514 -1.2 -3.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3095 -1.2 -1.3 hypothetical protein compare
Pf6N2E2_751 -1.2 -3.5 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_4360 -1.2 -6.7 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_3074 -1.1 -2.2 FIG00960973: hypothetical protein compare
Pf6N2E2_3260 -1.1 -4.0 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_6058 -1.1 -4.0 FIG139976: hypothetical protein compare
Pf6N2E2_623 -1.1 -1.5 FIG00954674: hypothetical protein compare
Pf6N2E2_178 -1.1 -1.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5130 -1.1 -3.2 hypothetical protein compare
Pf6N2E2_622 -1.1 -4.4 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_2472 -1.1 -3.3 hypothetical protein compare
Pf6N2E2_6057 -1.1 -2.3 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_1136 -1.1 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_2992 -1.1 -3.3 Regulatory protein RecX compare
Pf6N2E2_3534 -1.1 -1.2 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2827 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_4418 -1.0 -1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2474 -1.0 -5.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_1670 -1.0 -2.5 conserved membrane protein compare
Pf6N2E2_3039 -1.0 -4.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_4915 -1.0 -5.1 FIG000875: Thioredoxin domain-containing protein EC-YbbN compare
Pf6N2E2_2189 -1.0 -3.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1530 -1.0 -4.1 Flagellar regulatory protein FleQ compare
Pf6N2E2_2674 -1.0 -1.3 FIG00953856: hypothetical protein compare
Pf6N2E2_3505 -1.0 -1.0 Translation initiation factor SUI1-related protein compare
Pf6N2E2_1246 -1.0 -2.5 FIG00961372: hypothetical protein compare
Pf6N2E2_5536 -1.0 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_629 -1.0 -3.2 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_4365 -1.0 -3.6 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_5640 -0.9 -0.8 FIG00955597: hypothetical protein compare
Pf6N2E2_608 -0.9 -4.8 Transcriptional regulator of the arabinose operon in Shewanella, GntR family compare
Pf6N2E2_3942 -0.9 -5.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5052 -0.9 -1.9 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_2188 -0.9 -3.8 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_3134 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_3504 -0.9 -6.0 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_3257 -0.9 -2.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2137 -0.9 -4.8 DNA polymerase II (EC 2.7.7.7) compare
Pf6N2E2_5531 -0.9 -3.3 hypothetical protein compare
Pf6N2E2_5346 -0.9 -1.7 rRNA small subunit methyltransferase I compare
Pf6N2E2_3617 -0.9 -3.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5344 -0.9 -4.3 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Pf6N2E2_6064 -0.9 -4.3 2-methylaconitate isomerase compare
Pf6N2E2_5987 -0.9 -4.3 OmpA family protein compare
Pf6N2E2_4928 -0.9 -1.6 Permeases of the major facilitator superfamily compare
Pf6N2E2_736 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_5001 -0.9 -0.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5272 -0.9 -3.8 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_1199 -0.9 -2.7 hypothetical protein compare
Pf6N2E2_2018 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_2284 -0.8 -2.4 Cell division inhibitor-related protein compare
Pf6N2E2_2017 -0.8 -2.5 DNA-binding protein compare
Pf6N2E2_6070 -0.8 -2.7 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_3537 -0.8 -3.7 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_1431 -0.8 -1.6 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_5261 -0.8 -1.1 FIG00956983: hypothetical protein compare
Pf6N2E2_3370 -0.8 -6.0 DNA repair protein RecN compare
Pf6N2E2_3249 -0.8 -5.2 Zn-dependent protease with chaperone function compare
Pf6N2E2_823 -0.8 -4.7 Outer membrane protein OprN compare
Pf6N2E2_4150 -0.8 -2.0 probable exported protein YPO0432 compare
Pf6N2E2_2292 -0.8 -2.4 Universal stress protein family COG0589 compare
Pf6N2E2_3480 -0.8 -1.3 Transcriptional regulator, ArsR family compare
Pf6N2E2_3201 -0.8 -2.2 Transcriptional regulator, MerR family compare
Pf6N2E2_4673 -0.8 -2.3 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_3271 -0.8 -1.8 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4804 -0.8 -2.9 ApaG protein compare
Pf6N2E2_2065 -0.8 -2.4 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_5414 -0.8 -5.5 Nucleoid-associated protein compare
Pf6N2E2_4560 -0.8 -2.8 probable integral membrane protein NMA1899 compare
Pf6N2E2_1433 -0.8 -2.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5171 -0.8 -6.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_2218 -0.8 -2.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_625 -0.8 -2.6 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_1532 -0.8 -5.1 FIG003847: Oxidoreductase (flavoprotein) compare
Pf6N2E2_4298 -0.8 -3.1 Uncharacterized protein ImpB compare
Pf6N2E2_384 -0.8 -1.1 Glycine cleavage system transcriptional activator compare
Pf6N2E2_479 -0.8 -3.0 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_294 -0.8 -4.8 Arginine-tRNA-protein transferase (EC 2.3.2.8) compare
Pf6N2E2_5842 -0.8 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_74 -0.8 -1.1 DedD protein compare
Pf6N2E2_2509 -0.8 -1.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2756 -0.7 -3.5 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5291 -0.7 -6.2 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_4562 -0.7 -1.7 L-cystine uptake protein TcyP compare
Pf6N2E2_968 -0.7 -2.9 FIG00962395: hypothetical protein compare
Pf6N2E2_2699 -0.7 -4.0 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_2496 -0.7 -1.4 FIG00956575: hypothetical protein compare
Pf6N2E2_2261 -0.7 -3.3 VacJ-like lipoprotein precursor compare
Pf6N2E2_624 -0.7 -2.7 hypothetical protein PA3071 compare
Pf6N2E2_3672 -0.7 -4.1 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare


Specific Phenotypes

For 35 genes in this experiment

For stress Potassium chromate in Pseudomonas fluorescens FW300-N2E2

For stress Potassium chromate across organisms