Experiment setAIT049 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Potassium chromate 0.0000015625 M

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_2133 +7.0 49.4 Putative sulfate permease compare
Pf6N2E2_2465 +6.0 38.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_563 +5.6 43.2 Serine transporter compare
Pf6N2E2_4007 +5.2 4.4 FIG00956018: hypothetical protein compare
Pf6N2E2_2447 +4.2 28.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5153 +3.7 24.0 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_4006 +3.2 4.7 Sulfate and thiosulfate binding protein CysP compare
Pf6N2E2_2127 +3.1 15.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4564 +3.0 21.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2126 +2.8 9.6 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_5175 +2.6 22.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5764 +2.5 18.4 C4-dicarboxylate transporter/malic acid transport protein compare
Pf6N2E2_2936 +2.5 19.4 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_3612 +2.5 7.6 HflK protein compare
Pf6N2E2_2984 +2.3 7.3 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_5989 +2.2 18.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5176 +2.1 10.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_2134 +2.0 6.5 putative lipoprotein compare
Pf6N2E2_5103 +2.0 5.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3611 +1.9 4.1 HflC protein compare
Pf6N2E2_4071 +1.9 12.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5111 +1.9 7.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_4008 +1.9 5.3 hypothetical protein compare
Pf6N2E2_5860 +1.9 13.7 Branched-chain amino acid transport system carrier protein compare
Pf6N2E2_4276 +1.8 9.4 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4277 +1.8 14.4 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_4391 +1.7 10.3 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_3763 +1.7 2.7 hypothetical protein compare
Pf6N2E2_4761 +1.7 13.2 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2384 +1.6 5.5 CmpX compare
Pf6N2E2_4762 +1.6 6.4 Biotin synthesis protein BioH compare
Pf6N2E2_5300 +1.6 11.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4759 +1.6 13.6 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_4763 +1.6 11.3 Biotin synthesis protein BioC compare
Pf6N2E2_4148 +1.6 10.5 Glutamate-aspartate carrier protein compare
Pf6N2E2_4279 +1.5 11.3 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5241 +1.5 6.4 Aminopeptidase N compare
Pf6N2E2_2985 +1.5 7.8 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_4764 +1.5 8.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4278 +1.5 11.3 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5319 +1.5 10.5 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_5321 +1.5 10.9 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_5988 +1.5 3.0 hypothetical protein compare
Pf6N2E2_2200 +1.5 3.3 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_5320 +1.4 10.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_525 +1.4 7.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4631 +1.4 9.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_77 +1.4 5.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5318 +1.4 12.5 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_2132 +1.4 4.0 FIG00956937: hypothetical protein compare
Pf6N2E2_4063 +1.3 4.8 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf6N2E2_4907 +1.3 9.8 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_3192 +1.3 1.5 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_4684 +1.3 2.4 hypothetical protein compare
Pf6N2E2_3529 +1.3 3.6 Toxin A compare
Pf6N2E2_3252 +1.2 9.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3541 +1.2 4.8 Putative multicopper oxidases compare
Pf6N2E2_4797 +1.2 4.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_71 +1.2 7.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5520 +1.2 8.2 Sensory box histidine kinase compare
Pf6N2E2_2313 +1.2 5.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4624 +1.2 2.1 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4159 +1.2 5.6 Cytochrome c4 compare
Pf6N2E2_895 +1.2 5.1 Transcriptional regulator, HxlR family compare
Pf6N2E2_3351 +1.1 4.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_43 +1.1 5.6 Histidine permease YuiF compare
Pf6N2E2_5177 +1.1 8.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3542 +1.1 10.0 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_4638 +1.1 4.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2059 +1.1 1.9 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_5679 +1.1 6.5 hypothetical protein compare
Pf6N2E2_4683 +1.1 5.7 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) compare
Pf6N2E2_3782 +1.1 5.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2312 +1.1 1.8 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_4614 +1.1 3.0 twitching motility protein PilH compare
Pf6N2E2_5317 +1.0 8.7 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_5339 +1.0 5.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5722 +1.0 1.7 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf6N2E2_4678 +1.0 1.5 hypothetical protein compare
Pf6N2E2_4092 +1.0 2.2 FIG00954395: hypothetical protein compare
Pf6N2E2_3786 +1.0 3.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_529 +1.0 6.1 FIG00954439: hypothetical protein compare
Pf6N2E2_4476 +1.0 5.8 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_1652 +0.9 2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_5647 +0.9 5.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4077 +0.9 2.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1213 +0.9 3.7 hypothetical protein compare
Pf6N2E2_2794 +0.9 2.0 putative membrane protein compare
Pf6N2E2_1735 +0.9 2.3 PhnB protein compare
Pf6N2E2_5337 +0.9 3.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2605 +0.9 5.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2552 +0.9 5.5 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4362 +0.9 2.5 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5240 +0.9 5.2 FIG00953775: hypothetical protein compare
Pf6N2E2_5508 +0.9 2.5 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2681 +0.9 4.3 3-phosphoglycerate kinase compare
Pf6N2E2_2282 +0.9 4.0 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_4486 +0.9 4.5 Glycine cleavage system H protein compare
Pf6N2E2_5262 +0.9 2.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_5338 +0.9 6.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4969 +0.9 1.8 hypothetical protein compare
Pf6N2E2_2582 +0.9 3.1 Flagellar motor switch protein FliN compare
Pf6N2E2_2788 +0.8 2.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_2400 +0.8 1.7 Thiol:disulfide interchange protein DsbG precursor compare
Pf6N2E2_2311 +0.8 5.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5794 +0.8 2.0 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5448 +0.8 4.8 hypothetical protein compare
Pf6N2E2_2106 +0.8 2.3 hypothetical protein compare
Pf6N2E2_3455 +0.8 1.6 Integral membrane protein YfiB compare
Pf6N2E2_2606 +0.8 3.9 hypothetical protein compare
Pf6N2E2_1626 +0.8 4.7 Putative ATP-binding component of a transport system compare
Pf6N2E2_3517 +0.8 3.6 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_2527 +0.8 3.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4597 +0.8 5.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4615 +0.8 1.9 type IV pili signal transduction protein PilI compare
Pf6N2E2_1085 +0.8 2.4 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_2318 +0.8 5.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5720 +0.8 5.1 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_156 +0.8 1.7 Carbon storage regulator compare
Pf6N2E2_2822 +0.8 5.6 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_4351 +0.8 5.3 Predicted signal transduction protein compare
Pf6N2E2_5824 +0.8 5.9 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf6N2E2_3096 +0.8 1.6 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4618 +0.8 4.2 Chemotaxis signal transduction protein compare
Pf6N2E2_4149 +0.8 3.0 Inhibitor of vertebrate lysozyme precursor compare
Pf6N2E2_420 +0.8 1.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3004 +0.8 2.0 Prophage baseplate assembly protein V compare
Pf6N2E2_4067 +0.8 5.4 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_737 +0.8 1.5 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_2933 +0.8 2.4 hypothetical protein compare
Pf6N2E2_48 +0.7 2.7 FIG00955661: hypothetical protein compare
Pf6N2E2_4414 +0.7 1.6 FIG00953808: hypothetical protein compare
Pf6N2E2_3029 +0.7 2.8 Holin compare
Pf6N2E2_3240 +0.7 1.6 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_5761 +0.7 1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2711 +0.7 4.6 Glutamine amidotransferase, class-II compare
Pf6N2E2_2310 +0.7 4.7 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3737 +0.7 2.3 General secretion pathway protein M compare
Pf6N2E2_693 +0.7 1.5 hypothetical protein compare
Pf6N2E2_6164 +0.7 1.5 tRNA-Val-TAC compare
Pf6N2E2_172 +0.7 4.0 FIG00953292: hypothetical protein compare
Pf6N2E2_2320 +0.7 2.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5575 +0.7 4.4 Glycerol uptake facilitator protein compare
Pf6N2E2_4996 +0.7 1.6 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_2391 +0.7 5.3 FIG137360: hypothetical protein compare
Pf6N2E2_4601 +0.7 1.7 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5237 +0.7 2.4 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_1009 +0.7 1.7 Inositol transport system permease protein compare
Pf6N2E2_4691 +0.7 2.1 hypothetical protein compare
Pf6N2E2_4024 +0.7 5.2 L-Proline/Glycine betaine transporter ProP compare
Pf6N2E2_414 +0.7 3.3 Chemotaxis protein CheD compare
Pf6N2E2_88 +0.7 1.9 hypothetical protein compare
Pf6N2E2_4829 +0.7 3.6 OsmC/Ohr family protein compare
Pf6N2E2_5902 +0.7 1.6 hypothetical protein compare
Pf6N2E2_1774 +0.7 1.9 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_4743 +0.7 1.1 hypothetical protein compare
Pf6N2E2_2561 +0.7 2.2 FIG00955434: hypothetical protein compare
Pf6N2E2_2389 +0.6 4.8 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Pf6N2E2_562 +0.6 2.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5170 +0.6 4.4 FIG00955330: hypothetical protein compare
Pf6N2E2_595 +0.6 2.3 Arsenical resistance operon repressor compare
Pf6N2E2_2708 +0.6 2.5 Lactam utilization protein LamB compare
Pf6N2E2_2706 +0.6 2.6 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_2367 +0.6 0.8 hypothetical protein compare
Pf6N2E2_1819 +0.6 3.3 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_4635 +0.6 4.4 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_2589 +0.6 3.0 Flagellar protein FliJ compare
Pf6N2E2_4091 +0.6 4.5 Oligopeptidase A (EC 3.4.24.70) compare
Pf6N2E2_3151 +0.6 2.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_28 +0.6 1.3 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_4128 +0.6 1.7 hypothetical protein compare
Pf6N2E2_2574 +0.6 0.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_3514 +0.6 1.8 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_5733 +0.6 2.8 NLP/P60 family protein compare
Pf6N2E2_89 +0.6 1.9 hypothetical protein compare
Pf6N2E2_3713 +0.6 2.0 Acyl carrier protein compare
Pf6N2E2_3868 +0.6 3.5 Transcriptional regulator, LysR family compare
Pf6N2E2_5864 +0.6 3.4 FIG00953296: hypothetical protein compare
Pf6N2E2_2135 +0.6 2.3 Aldose 1-epimerase (EC 5.1.3.3) compare
Pf6N2E2_5546 +0.6 3.5 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_4057 +0.6 1.0 lipoprotein, putative compare
Pf6N2E2_4059 +0.6 1.0 DNA-binding protein HU-alpha compare
Pf6N2E2_5661 +0.6 2.9 L-Arginine ABC transporter, permease protein AotQ (from data) compare
Pf6N2E2_5333 +0.6 3.4 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_1966 +0.6 1.4 SAM-dependent methyltransferases compare
Pf6N2E2_5936 +0.6 1.3 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_3696 +0.6 1.1 hypothetical protein compare
Pf6N2E2_5444 +0.6 2.8 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_5961 +0.6 3.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2701 +0.6 2.1 FIG00954689: hypothetical protein compare
Pf6N2E2_2869 +0.6 1.3 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3037 +0.6 4.3 RNA polymerase sigma factor RpoS compare
Pf6N2E2_510 +0.6 4.3 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf6N2E2_37 +0.6 1.7 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2712 +0.6 3.9 Permeases of the major facilitator superfamily compare
Pf6N2E2_4531 +0.6 1.4 hypothetical protein compare
Pf6N2E2_5574 +0.6 4.4 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_5943 +0.6 1.7 hypothetical protein compare
Pf6N2E2_5328 +0.6 1.4 FIG00958649: hypothetical protein compare
Pf6N2E2_2717 +0.6 2.2 putative cytoplasmic protein compare


Specific Phenotypes

For 35 genes in this experiment

For stress Potassium chromate in Pseudomonas fluorescens FW300-N2E2

For stress Potassium chromate across organisms