Experiment set9S521 for Rhodanobacter denitrificans FW104-10B01

Compare to:

biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS16160 -4.4 -1.4 DUF1674 domain-containing protein compare
LRK54_RS00175 -4.1 -2.9 transposase compare
LRK54_RS09865 -4.0 -2.1 CRISPR-associated endonuclease Cas2 compare
LRK54_RS17760 -4.0 -2.7 cation transporter compare
LRK54_RS06420 -3.9 -2.5 hypothetical protein compare
LRK54_RS05110 -3.8 -1.2 glycosyltransferase family 4 protein compare
LRK54_RS01465 -3.2 -4.8 RNA-binding S4 domain-containing protein compare
LRK54_RS12055 -3.1 -2.5 dipeptide epimerase compare
LRK54_RS10195 -3.1 -1.5 hypothetical protein compare
LRK54_RS14580 -3.0 -1.4 hypothetical protein compare
LRK54_RS17505 -2.7 -1.9 preprotein translocase subunit SecG compare
LRK54_RS14985 -2.7 -4.2 recombination regulator RecX compare
LRK54_RS03290 -2.7 -1.8 RIP metalloprotease RseP compare
LRK54_RS15485 -2.7 -2.3 hypothetical protein compare
LRK54_RS06415 -2.6 -1.8 hypothetical protein compare
LRK54_RS04025 -2.5 -1.1 diacylglycerol kinase compare
LRK54_RS14825 -2.5 -3.4 protease HtpX compare
LRK54_RS07020 -2.4 -1.6 ABC transporter permease compare
LRK54_RS14590 -2.4 -3.2 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS11890 -2.4 -2.1 O-acetyl-ADP-ribose deacetylase compare
LRK54_RS15925 -2.3 -2.1 carboxymuconolactone decarboxylase family protein compare
LRK54_RS13505 -2.3 -3.0 flagellar assembly protein FliH compare
LRK54_RS05350 -2.3 -3.3 manganese efflux pump MntP family protein compare
LRK54_RS00025 -2.2 -4.2 cold shock domain-containing protein compare
LRK54_RS08750 -2.2 -2.6 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS09125 -2.2 -4.6 hypothetical protein compare
LRK54_RS08760 -2.2 -3.0 transaldolase compare
LRK54_RS16660 -2.2 -3.9 VTT domain-containing protein compare
LRK54_RS11975 -2.1 -3.3 SLC13 family permease compare
LRK54_RS00670 -2.1 -3.2 OmpA family protein compare
LRK54_RS04585 -2.1 -2.5 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS14695 -2.1 -8.4 rhomboid family intramembrane serine protease compare
LRK54_RS05650 -2.0 -2.8 ABC transporter ATP-binding protein compare
LRK54_RS15035 -2.0 -5.1 M48 family metalloprotease compare
LRK54_RS00690 -2.0 -7.5 2-methylcitrate synthase compare
LRK54_RS03710 -2.0 -6.1 tetratricopeptide repeat protein compare
LRK54_RS11170 -1.9 -1.3 NADP-dependent malic enzyme compare
LRK54_RS00320 -1.9 -2.3 phosphoglycerate mutase compare
LRK54_RS16050 -1.9 -1.2 tetratricopeptide repeat protein compare
LRK54_RS06470 -1.9 -6.0 carboxy terminal-processing peptidase compare
LRK54_RS03110 -1.9 -6.6 nucleotidyltransferase family protein compare
LRK54_RS02895 -1.9 -6.6 rhomboid family intramembrane serine protease compare
LRK54_RS13675 -1.9 -1.5 methyl-accepting chemotaxis protein compare
LRK54_RS14260 -1.9 -2.2 Spx/MgsR family RNA polymerase-binding regulatory protein compare
LRK54_RS12460 -1.8 -2.2 hypothetical protein compare
LRK54_RS07715 -1.8 -7.9 LacI family DNA-binding transcriptional regulator conserved
LRK54_RS16940 -1.8 -5.1 RNA polymerase sigma factor RpoE compare
LRK54_RS00615 -1.8 -4.4 protease modulator HflC compare
LRK54_RS06425 -1.8 -1.7 ribonucleoside-diphosphate reductase compare
LRK54_RS13910 -1.8 -4.2 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS01520 -1.8 -10.0 amino acid permease compare
LRK54_RS00620 -1.8 -6.2 FtsH protease activity modulator HflK compare
LRK54_RS00805 -1.8 -2.7 segregation/condensation protein A compare
LRK54_RS13760 -1.8 -6.3 trypsin-like peptidase domain-containing protein compare
LRK54_RS16755 -1.7 -3.3 SurA N-terminal domain-containing protein compare
LRK54_RS00675 -1.7 -4.6 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS04305 -1.7 -2.5 shikimate kinase compare
LRK54_RS16350 -1.7 -1.5 helix-turn-helix domain-containing protein compare
LRK54_RS13440 -1.7 -3.4 flagellar basal body P-ring protein FlgI compare
LRK54_RS00440 -1.7 -5.0 high frequency lysogenization protein HflD compare
LRK54_RS10855 -1.7 -2.6 protein-export chaperone SecB compare
LRK54_RS09805 -1.7 -4.9 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS17600 -1.7 -3.6 hypothetical protein compare
LRK54_RS11290 -1.7 -1.6 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS09345 -1.7 -1.7 ATP-binding protein compare
LRK54_RS16945 -1.7 -2.5 sigma-E factor negative regulatory protein compare
LRK54_RS06030 -1.6 -1.9 phage baseplate assembly protein V compare
LRK54_RS04350 -1.6 -3.4 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS06885 -1.6 -4.2 rhodanese-like domain-containing protein compare
LRK54_RS05985 -1.6 -1.1 response regulator transcription factor compare
LRK54_RS16615 -1.6 -2.1 phosphopyruvate hydratase compare
LRK54_RS12860 -1.6 -2.8 RNase adapter RapZ compare
LRK54_RS08895 -1.6 -2.7 hypothetical protein compare
LRK54_RS06755 -1.6 -10.3 LTA synthase family protein compare
LRK54_RS03125 -1.6 -1.5 preprotein translocase subunit YajC compare
LRK54_RS05415 -1.5 -4.9 TetR/AcrR family transcriptional regulator compare
LRK54_RS15650 -1.5 -1.7 AzlC family ABC transporter permease compare
LRK54_RS16730 -1.5 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS12670 -1.5 -4.6 glycosyltransferase compare
LRK54_RS05980 -1.5 -1.0 ATP-binding protein compare
LRK54_RS13885 -1.5 -1.6 DUF2249 domain-containing protein compare
LRK54_RS01395 -1.5 -1.2 arsenate reductase ArsC compare
LRK54_RS10075 -1.5 -2.4 tetratricopeptide repeat protein compare
LRK54_RS09155 -1.5 -3.3 SPOR domain-containing protein compare
LRK54_RS08585 -1.5 -11.5 RimK family alpha-L-glutamate ligase compare
LRK54_RS01295 -1.5 -1.4 DUF6165 family protein compare
LRK54_RS05785 -1.5 -4.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS18050 -1.5 -8.0 lipopolysaccharide assembly protein LapB compare
LRK54_RS15105 -1.5 -3.9 polynucleotide adenylyltransferase PcnB compare
LRK54_RS13555 -1.5 -2.6 flagellar biosynthetic protein FliR compare
LRK54_RS07215 -1.5 -3.6 cytochrome c4 compare
LRK54_RS15200 -1.4 -2.4 AraC family transcriptional regulator compare
LRK54_RS12865 -1.4 -4.2 HPr(Ser) kinase/phosphatase compare
LRK54_RS01680 -1.4 -4.4 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS02855 -1.4 -4.4 type I restriction-modification system subunit M compare
LRK54_RS11230 -1.4 -0.7 universal stress protein compare
LRK54_RS07570 -1.4 -1.7 monovalent cation/H(+) antiporter subunit G compare
LRK54_RS14900 -1.4 -7.0 TonB-dependent siderophore receptor compare
LRK54_RS12300 -1.4 -3.8 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS02070 -1.4 -3.7 acyl-CoA dehydrogenase family protein compare
LRK54_RS05200 -1.4 -2.3 hypothetical protein compare
LRK54_RS02725 -1.4 -2.7 OsmC family protein compare
LRK54_RS02180 -1.4 -4.9 UvrD-helicase domain-containing protein compare
LRK54_RS12295 -1.4 -2.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS06255 -1.4 -2.1 YbaN family protein compare
LRK54_RS00305 -1.4 -7.3 asparagine synthase B compare
LRK54_RS02520 -1.4 -3.8 cytochrome c biogenesis protein CcsA compare
LRK54_RS12590 -1.4 -7.0 molybdopterin-dependent oxidoreductase compare
LRK54_RS02275 -1.4 -2.4 enoyl-CoA hydratase-related protein compare
LRK54_RS02090 -1.3 -6.5 NAD-glutamate dehydrogenase compare
LRK54_RS13620 -1.3 -1.3 hypothetical protein compare
LRK54_RS00395 -1.3 -2.4 prephenate dehydratase compare
LRK54_RS00085 -1.3 -0.9 tetratricopeptide repeat protein compare
LRK54_RS11175 -1.3 -4.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS17435 -1.3 -2.4 nucleoside diphosphate kinase regulator compare
LRK54_RS13395 -1.3 -2.1 methyl-accepting chemotaxis protein compare
LRK54_RS02535 -1.3 -3.7 50S ribosomal protein L9 compare
LRK54_RS05535 -1.3 -4.1 glycosyltransferase family 2 protein compare
LRK54_RS05740 -1.3 -4.0 phosphoglycerate kinase compare
LRK54_RS04720 -1.3 -3.6 phosphoribosylformylglycinamidine synthase compare
LRK54_RS04365 -1.3 -1.0 H-NS histone family protein compare
LRK54_RS05615 -1.3 -7.3 hypothetical protein compare
LRK54_RS05580 -1.3 -2.2 hypothetical protein compare
LRK54_RS01685 -1.3 -7.4 tryptophan synthase subunit beta compare
LRK54_RS14055 -1.3 -2.1 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
LRK54_RS12660 -1.3 -5.8 translocation/assembly module TamB domain-containing protein compare
LRK54_RS09185 -1.3 -7.1 DUF4124 domain-containing protein compare
LRK54_RS15635 -1.3 -2.8 DUF1656 domain-containing protein compare
LRK54_RS01800 -1.3 -1.7 dCTP deaminase compare
LRK54_RS08930 -1.3 -2.7 XRE family transcriptional regulator compare
LRK54_RS03185 -1.3 -3.1 phosphoglycerate dehydrogenase compare
LRK54_RS02175 -1.2 -5.5 exodeoxyribonuclease V subunit gamma compare
LRK54_RS12875 -1.2 -5.7 RNA polymerase factor sigma-54 compare
LRK54_RS04615 -1.2 -3.1 transcriptional regulator NrdR compare
LRK54_RS12625 -1.2 -6.3 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS17905 -1.2 -1.6 NfuA family Fe-S biogenesis protein compare
LRK54_RS13830 -1.2 -3.8 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS06515 -1.2 -2.1 rod shape-determining protein MreD compare
LRK54_RS17220 -1.2 -1.8 cbb3-type cytochrome c oxidase subunit 3 compare
LRK54_RS10950 -1.2 -6.7 S41 family peptidase compare
LRK54_RS16735 -1.2 -7.8 endopeptidase La compare
LRK54_RS18060 -1.2 -3.2 polysaccharide biosynthesis protein compare
LRK54_RS04245 -1.2 -1.1 BON domain-containing protein compare
LRK54_RS01610 -1.2 -2.2 ATP phosphoribosyltransferase compare
LRK54_RS10760 -1.2 -2.6 DUF2249 domain-containing protein compare
LRK54_RS15820 -1.1 -1.5 hypothetical protein compare
LRK54_RS03730 -1.1 -1.4 acylphosphatase compare
LRK54_RS10355 -1.1 -1.8 threonine synthase compare
LRK54_RS12200 -1.1 -3.8 division/cell wall cluster transcriptional repressor MraZ compare
LRK54_RS12665 -1.1 -5.5 autotransporter assembly complex protein TamA compare
LRK54_RS17080 -1.1 -1.2 hypothetical protein compare
LRK54_RS03365 -1.1 -3.1 polyprenyl synthetase family protein compare
LRK54_RS13625 -1.1 -1.6 flagellar hook-length control protein FliK compare
LRK54_RS17270 -1.1 -2.0 DNA translocase FtsK compare
LRK54_RS03105 -1.1 -5.8 phosphotransferase compare
LRK54_RS16810 -1.1 -0.9 hypothetical protein compare
LRK54_RS14460 -1.1 -4.4 septum site-determining protein MinD compare
LRK54_RS12005 -1.1 -3.5 30S ribosomal protein S6--L-glutamate ligase compare
LRK54_RS12945 -1.1 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS05655 -1.1 -1.9 ABC transporter permease compare
LRK54_RS05540 -1.1 -2.5 glycosyltransferase family 2 protein compare
LRK54_RS00695 -1.1 -2.4 methylisocitrate lyase compare
LRK54_RS07220 -1.0 -4.3 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS05500 -1.0 -1.1 hypothetical protein compare
LRK54_RS16930 -1.0 -4.5 hypothetical protein compare
LRK54_RS12595 -1.0 -2.4 (2Fe-2S)-binding protein compare
LRK54_RS16720 -1.0 -3.7 trigger factor compare
LRK54_RS11565 -1.0 -2.0 anthranilate phosphoribosyltransferase compare
LRK54_RS03895 -1.0 -5.6 lipopolysaccharide biosynthesis protein compare
LRK54_RS00080 -1.0 -5.0 helix-turn-helix domain-containing protein compare
LRK54_RS12505 -1.0 -4.1 hypothetical protein compare
LRK54_RS09250 -1.0 -7.2 rhomboid family intramembrane serine protease compare
LRK54_RS11385 -1.0 -1.7 co-chaperone DjlA compare
LRK54_RS06215 -1.0 -2.0 YciI family protein compare
LRK54_RS10925 -1.0 -0.9 cell division ATP-binding protein FtsE compare
LRK54_RS00680 -1.0 -4.8 TerC family protein compare
LRK54_RS11570 -1.0 -1.9 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS07775 -1.0 -1.7 MarR family transcriptional regulator compare
LRK54_RS02460 -1.0 -4.5 phosphoglycolate phosphatase compare
LRK54_RS10570 -1.0 -2.2 accessory factor UbiK family protein compare
LRK54_RS06610 -1.0 -6.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS18055 -1.0 -2.5 glycosyltransferase family 4 protein compare
LRK54_RS11415 -1.0 -5.7 anthranilate synthase component I compare
LRK54_RS15360 -1.0 -1.8 arginase family protein compare
LRK54_RS06685 -1.0 -6.2 TolC family outer membrane protein compare
LRK54_RS13970 -1.0 -1.7 MoaD/ThiS family protein compare
LRK54_RS07860 -1.0 -4.5 SIS domain-containing protein compare
LRK54_RS10510 -1.0 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK54_RS17205 -0.9 -2.7 heavy metal translocating P-type ATPase compare
LRK54_RS17595 -0.9 -2.4 TolC family protein compare
LRK54_RS10660 -0.9 -0.8 DUF4156 domain-containing protein compare
LRK54_RS12190 -0.9 -3.0 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS02970 -0.9 -1.8 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK54_RS16255 -0.9 -0.9 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS10620 -0.9 -0.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
LRK54_RS12580 -0.9 -1.7 hypothetical protein compare
LRK54_RS05945 -0.9 -1.6 hypothetical protein compare
LRK54_RS01545 -0.9 -2.8 acireductone dioxygenase compare
LRK54_RS00345 -0.9 -1.6 TraB/GumN family protein compare
LRK54_RS16150 -0.9 -0.9 cell wall hydrolase compare


Specific Phenotypes

For 1 genes in this experiment

For biofilm assay; biofilm sample Manganese (II) chloride tetrahydrate in Rhodanobacter denitrificans FW104-10B01

For biofilm assay; biofilm sample Manganese (II) chloride tetrahydrate across organisms