Experiment set9S364 for Enterobacter sp. TBS_079

Compare to:

casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
MPMX20_01355 -5.1 -1.7 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_03354 -4.8 -9.2 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_03338 -4.8 -6.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_00514 -4.7 -4.6 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_04442 -4.7 -8.4 Sec-independent protein translocase protein TatC compare
MPMX20_02494 -4.6 -10.2 Orotidine 5'-phosphate decarboxylase compare
MPMX20_01549 -4.6 -3.2 ATP-binding/permease protein CydD compare
MPMX20_01354 -4.4 -5.0 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_01097 -4.3 -10.0 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_00093 -4.3 -9.2 Orotate phosphoribosyltransferase compare
MPMX20_03018 -4.3 -7.2 hypothetical protein compare
MPMX20_01596 -4.3 -25.0 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_01098 -4.3 -7.6 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_01950 -4.3 -5.0 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_03019 -4.2 -19.7 hypothetical protein compare
MPMX20_01367 -4.1 -9.6 Tol-Pal system protein TolR compare
MPMX20_03426 -4.1 -17.4 Phosphoribosylformylglycinamidine synthase compare
MPMX20_01548 -4.0 -7.2 putative ABC transporter ATP-binding/permease protein compare
MPMX20_03247 -4.0 -8.6 Amidophosphoribosyltransferase compare
MPMX20_00740 -4.0 -13.4 Carbamoyl-phosphate synthase large chain compare
MPMX20_02476 -4.0 -2.7 Putrescine export system permease protein SapC compare
MPMX20_03022 -4.0 -2.7 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_03986 -3.9 -3.9 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_00225 -3.9 -11.9 Phosphoribosylamine--glycine ligase compare
MPMX20_01370 -3.9 -5.1 Peptidoglycan-associated lipoprotein compare
MPMX20_00102 -3.9 -2.7 hypothetical protein compare
MPMX20_00544 -3.8 -10.2 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_01369 -3.8 -11.3 Tol-Pal system protein TolB compare
MPMX20_04119 -3.7 -2.5 DNA polymerase III subunit chi compare
MPMX20_03010 -3.7 -5.6 UDP-glucose 4-epimerase compare
MPMX20_01368 -3.7 -5.7 hypothetical protein compare
MPMX20_03213 -3.7 -12.6 NADH-quinone oxidoreductase subunit G compare
MPMX20_00226 -3.7 -11.7 Bifunctional purine biosynthesis protein PurH compare
MPMX20_00106 -3.7 -5.6 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_04768 -3.6 -11.5 hypothetical protein compare
MPMX20_00110 -3.6 -20.7 hypothetical protein compare
MPMX20_00721 -3.6 -4.2 Chaperone protein DnaJ compare
MPMX20_01361 -3.5 -10.7 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_00109 -3.5 -22.5 hypothetical protein compare
MPMX20_04595 -3.5 -2.4 Glutamine synthetase compare
MPMX20_03215 -3.4 -5.6 NADH-quinone oxidoreductase subunit E compare
MPMX20_03214 -3.4 -10.8 NADH-quinone oxidoreductase subunit F compare
MPMX20_04483 -3.4 -4.0 Lipid III flippase compare
MPMX20_00739 -3.4 -6.6 Carbamoyl-phosphate synthase small chain compare
MPMX20_00831 -3.3 -7.1 RNA polymerase-binding transcription factor DksA compare
MPMX20_03685 -3.3 -3.2 RecBCD enzyme subunit RecC compare
MPMX20_01901 -3.3 -3.0 Integration host factor subunit alpha compare
MPMX20_01366 -3.3 -7.0 Tol-Pal system protein TolQ compare
MPMX20_01028 -3.3 -3.8 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_01362 -3.3 -7.2 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_03683 -3.3 -3.2 RecBCD enzyme subunit RecB compare
MPMX20_03209 -3.2 -3.6 NADH-quinone oxidoreductase subunit K compare
MPMX20_01352 -3.2 -10.1 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_01334 -3.2 -10.2 Phosphoglucomutase compare
MPMX20_04162 -3.2 -6.0 3-dehydroquinate dehydratase compare
MPMX20_04626 -3.2 -5.2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_00105 -3.1 -13.4 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_03409 -3.1 -3.6 Iron-binding protein IscA compare
MPMX20_01030 -3.1 -11.5 Lon protease compare
MPMX20_04650 -3.1 -5.1 tRNA modification GTPase MnmE compare
MPMX20_03210 -3.1 -9.1 NADH-quinone oxidoreductase subunit J compare
MPMX20_03408 -3.1 -3.4 Co-chaperone protein HscB compare
MPMX20_04140 -3.1 -10.9 Malate dehydrogenase compare
MPMX20_03382 -3.0 -2.9 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_04197 -3.0 -6.7 Trk system potassium uptake protein TrkA compare
MPMX20_01741 -3.0 -6.0 Dihydroorotase compare
MPMX20_01356 -3.0 -10.7 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_04374 -3.0 -3.3 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
MPMX20_03021 -3.0 -9.5 hypothetical protein compare
MPMX20_02477 -3.0 -4.9 Peptide transport system ATP-binding protein SapD compare
MPMX20_04469 -3.0 -5.9 Adenylate cyclase compare
MPMX20_02826 -2.9 -3.4 Cold shock-like protein CspB compare
MPMX20_01607 -2.8 -4.8 Outer membrane protein A compare
MPMX20_04642 -2.8 -3.3 Phosphate import ATP-binding protein PstB compare
MPMX20_03355 -2.7 -9.1 Phosphoribosylglycinamide formyltransferase compare
MPMX20_04278 -2.7 -6.7 3-dehydroquinate synthase compare
MPMX20_03218 -2.7 -4.6 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_00108 -2.7 -17.7 hypothetical protein compare
MPMX20_04670 -2.7 -3.0 hypothetical protein compare
MPMX20_04489 -2.7 -14.9 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_04444 -2.7 -2.3 Sec-independent protein translocase protein TatA compare
MPMX20_01357 -2.6 -6.5 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_03206 -2.6 -9.4 NADH-quinone oxidoreductase subunit N compare
MPMX20_03407 -2.6 -4.8 Chaperone protein HscA compare
MPMX20_01570 -2.6 -3.6 Integration host factor subunit beta compare
MPMX20_00807 -2.5 -3.4 Pyruvate dehydrogenase E1 component compare
MPMX20_00241 -2.5 -9.6 Glucose-6-phosphate isomerase compare
MPMX20_04440 -2.5 -2.5 Transcription antitermination protein RfaH compare
MPMX20_03211 -2.5 -4.9 NADH-quinone oxidoreductase subunit I compare
MPMX20_04110 -2.5 -5.8 Nitrogen regulatory protein compare
MPMX20_03207 -2.5 -8.0 NADH-quinone oxidoreductase subunit M compare
MPMX20_02768 -2.5 -4.4 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_01029 -2.4 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_03217 -2.4 -6.1 NADH-quinone oxidoreductase subunit B compare
MPMX20_03013 -2.4 -12.5 dTDP-glucose 4,6-dehydratase compare
MPMX20_03208 -2.3 -6.2 NADH-quinone oxidoreductase subunit L compare
MPMX20_01350 -2.3 -3.1 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_02574 -2.3 -3.9 putative intracellular septation protein A compare
MPMX20_02478 -2.2 -8.9 Putrescine export system ATP-binding protein SapF compare
MPMX20_04520 -2.2 -9.8 Argininosuccinate lyase compare
MPMX20_00998 -2.2 -3.8 Sec translocon accessory complex subunit YajC compare
MPMX20_03490 -2.2 -6.1 SsrA-binding protein compare
MPMX20_03216 -2.2 -9.7 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_04077 -2.2 -8.6 Argininosuccinate synthase compare
MPMX20_04530 -2.2 -9.6 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_02766 -2.1 -3.9 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_03267 -2.1 -3.4 Phosphohistidine phosphatase SixA compare
MPMX20_00197 -2.0 -2.3 tRNA-Tyr compare
MPMX20_04443 -2.0 -1.3 Sec-independent protein translocase protein TatB compare
MPMX20_00773 -2.0 -10.9 Catabolite repressor/activator compare
MPMX20_03248 -2.0 -3.2 Colicin V production protein compare
MPMX20_01984 -1.9 -2.5 Ribonuclease T compare
MPMX20_03310 -1.9 -5.2 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_04463 -1.9 -7.1 DNA helicase II compare
MPMX20_02635 -1.9 -2.3 Release factor glutamine methyltransferase compare
MPMX20_04276 -1.9 -6.1 DNA adenine methylase compare
MPMX20_04189 -1.8 -4.3 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_04275 -1.8 -3.2 Ribulose-phosphate 3-epimerase compare
MPMX20_04601 -1.8 -2.7 DNA polymerase I compare
MPMX20_03017 -1.8 -8.2 hypothetical protein compare
MPMX20_00086 -1.8 -2.8 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_04518 -1.8 -5.9 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_02475 -1.8 -5.5 Putrescine export system permease protein SapB compare
MPMX20_01567 -1.8 -7.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_04279 -1.8 -2.5 Shikimate kinase 1 compare
MPMX20_04532 -1.7 -2.4 Met repressor compare
MPMX20_03309 -1.7 -3.2 Phosphocarrier protein HPr compare
MPMX20_02701 -1.7 -2.9 Fatty acid metabolism regulator protein compare
MPMX20_04597 -1.7 -6.7 DNA-binding transcriptional regulator NtrC compare
MPMX20_02295 -1.7 -2.3 hypothetical protein compare
MPMX20_03264 -1.7 -6.0 Chorismate synthase compare
MPMX20_04640 -1.7 -2.8 Phosphate transport system permease protein PstC compare
MPMX20_00419 -1.7 -8.1 Aspartate ammonia-lyase compare
MPMX20_02591 -1.7 -2.8 DNA-binding protein H-NS compare
MPMX20_00728 -1.6 -1.3 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase compare
MPMX20_02593 -1.6 -11.4 Regulator of RpoS compare
MPMX20_01734 -1.6 -7.2 Lipid A biosynthesis lauroyltransferase compare
MPMX20_00087 -1.6 -2.7 DNA-directed RNA polymerase subunit omega compare
MPMX20_01353 -1.6 -3.7 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_01550 -1.6 -2.1 Thioredoxin reductase compare
MPMX20_03020 -1.6 -5.2 hypothetical protein compare
MPMX20_00812 -1.5 -6.4 Aconitate hydratase B compare
MPMX20_04306 -1.5 -4.7 Glycerol-3-phosphate regulon repressor compare
MPMX20_01351 -1.5 -2.5 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_03012 -1.5 -8.3 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_04482 -1.4 -7.0 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
MPMX20_02512 -1.4 -8.4 Tryptophan biosynthesis protein TrpCF compare
MPMX20_02757 -1.4 -3.7 Glucose-6-phosphate 1-dehydrogenase compare
MPMX20_04484 -1.4 -5.9 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
MPMX20_04385 -1.4 -4.8 hypothetical protein compare
MPMX20_04301 -1.4 -2.9 Fe/S biogenesis protein NfuA compare
MPMX20_00570 -1.4 -8.8 putative BsuMI modification methylase subunit YdiO compare
MPMX20_00745 -1.4 -3.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_00708 -1.4 -3.0 Aerobic respiration control protein ArcA compare
MPMX20_03580 -1.3 -4.3 Protein RecA compare
MPMX20_00899 -1.3 -1.8 Ribonuclease HI compare
MPMX20_02672 -1.3 -11.0 hypothetical protein compare
MPMX20_03015 -1.3 -10.1 Phosphoglucosamine mutase compare
MPMX20_00700 -1.3 -2.8 Trp operon repressor compare
MPMX20_00032 -1.3 -4.1 Acetolactate synthase isozyme 1 small subunit compare
MPMX20_03090 -1.3 -1.5 Methionine--tRNA ligase compare
MPMX20_02513 -1.3 -7.6 Tryptophan synthase beta chain compare
MPMX20_01958 -1.3 -0.9 Fumarase D compare
MPMX20_02309 -1.3 -3.8 hypothetical protein compare
MPMX20_02307 -1.3 -2.4 hypothetical protein compare
MPMX20_00395 -1.3 -2.7 hypothetical protein compare
MPMX20_03753 -1.2 -3.8 Tyrosine recombinase XerD compare
MPMX20_03212 -1.2 -4.0 NADH-quinone oxidoreductase subunit H compare
MPMX20_02770 -1.2 -3.2 Dihydroneopterin triphosphate diphosphatase compare
MPMX20_04485 -1.2 -4.1 dTDP-fucosamine acetyltransferase compare
MPMX20_03037 -1.2 -4.3 hypothetical protein compare
MPMX20_01566 -1.2 -7.7 Phosphoserine aminotransferase compare
MPMX20_03016 -1.2 -9.0 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_02510 -1.2 -7.7 Anthranilate synthase component 1 compare
MPMX20_03047 -1.2 -3.6 dCTP deaminase compare
MPMX20_04692 -1.2 -1.0 hypothetical protein compare
MPMX20_02021 -1.2 -6.5 Fumarate hydratase class I, aerobic compare
MPMX20_03226 -1.2 -2.8 Acetate kinase compare
MPMX20_04465 -1.2 -3.8 Tyrosine recombinase XerC compare
MPMX20_04141 -1.2 -4.5 Arginine repressor compare
MPMX20_03443 -1.2 -2.8 Anti-sigma-E factor RseA compare
MPMX20_00222 -1.1 -3.5 hypothetical protein compare
MPMX20_03390 -1.1 -4.3 Outer membrane protein assembly factor BamB compare
MPMX20_00801 -1.1 -2.7 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
MPMX20_01552 -1.1 -3.5 hypothetical protein compare
MPMX20_02903 -1.1 -2.1 hypothetical protein compare
MPMX20_01586 -1.1 -5.0 Aspartate aminotransferase compare
MPMX20_02344 -1.1 -1.4 hypothetical protein compare
MPMX20_02474 -1.1 -4.0 Peptide transport periplasmic protein SapA compare
MPMX20_03756 -1.1 -2.8 FAD assembly factor SdhE compare
MPMX20_02514 -1.1 -3.0 Tryptophan synthase alpha chain compare
MPMX20_02305 -1.1 -1.4 hypothetical protein compare
MPMX20_01156 -1.1 -2.8 hypothetical protein compare
MPMX20_00453 -1.1 -1.4 RNA-binding protein Hfq compare
MPMX20_04521 -1.1 -4.7 Acetylglutamate kinase compare
MPMX20_00255 -1.1 -3.9 Chorismate pyruvate-lyase compare
MPMX20_04585 -1.0 -2.9 HTH-type transcriptional repressor CsqR compare
MPMX20_04433 -1.0 -6.9 Trk system potassium uptake protein TrkH compare
MPMX20_02696 -1.0 -3.6 Murein tetrapeptide carboxypeptidase compare
MPMX20_04480 -1.0 -4.3 UDP-N-acetyl-D-mannosaminuronic acid transferase compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in carbon source experiments

For carbon source casamino acids across organisms