Experiment set9S358 for Enterobacter sp. TBS_079

Compare to:

D-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
MPMX20_00831 -6.9 -4.8 RNA polymerase-binding transcription factor DksA compare
MPMX20_01366 -6.7 -4.6 Tol-Pal system protein TolQ compare
MPMX20_01370 -6.6 -6.4 Peptidoglycan-associated lipoprotein compare
MPMX20_03354 -6.3 -10.6 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_00693 -6.3 -9.7 Phosphoserine phosphatase compare
MPMX20_04443 -5.8 -4.0 Sec-independent protein translocase protein TatB compare
MPMX20_03215 -5.8 -4.0 NADH-quinone oxidoreductase subunit E compare
MPMX20_01566 -5.7 -14.7 Phosphoserine aminotransferase compare
MPMX20_03209 -5.6 -3.9 NADH-quinone oxidoreductase subunit K compare
MPMX20_03264 -5.6 -5.5 Chorismate synthase compare
MPMX20_03338 -5.6 -6.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_01354 -5.6 -3.9 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_04077 -5.5 -11.2 Argininosuccinate synthase compare
MPMX20_01369 -5.5 -10.5 Tol-Pal system protein TolB compare
MPMX20_04162 -5.5 -3.8 3-dehydroquinate dehydratase compare
MPMX20_00225 -5.4 -11.0 Phosphoribosylamine--glycine ligase compare
MPMX20_01286 -5.4 -3.2 Sec-independent protein translocase protein TatE compare
MPMX20_00226 -5.4 -10.4 Bifunctional purine biosynthesis protein PurH compare
MPMX20_01368 -5.4 -7.3 hypothetical protein compare
MPMX20_00927 -5.4 -16.5 Glutamate 5-kinase compare
MPMX20_00773 -5.3 -14.4 Catabolite repressor/activator compare
MPMX20_04442 -5.3 -7.2 Sec-independent protein translocase protein TatC compare
MPMX20_03212 -5.2 -3.6 NADH-quinone oxidoreductase subunit H compare
MPMX20_03426 -5.2 -17.0 Phosphoribosylformylglycinamidine synthase compare
MPMX20_03986 -5.2 -5.7 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_03214 -5.1 -7.9 NADH-quinone oxidoreductase subunit F compare
MPMX20_03218 -5.1 -5.0 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_03468 -5.1 -9.2 T-protein compare
MPMX20_01950 -5.1 -3.5 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_03213 -5.1 -7.7 NADH-quinone oxidoreductase subunit G compare
MPMX20_01367 -5.0 -8.4 Tol-Pal system protein TolR compare
MPMX20_01334 -5.0 -9.6 Phosphoglucomutase compare
MPMX20_01548 -5.0 -3.4 putative ABC transporter ATP-binding/permease protein compare
MPMX20_03019 -5.0 -11.6 hypothetical protein compare
MPMX20_00745 -5.0 -4.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_00928 -4.9 -13.5 Gamma-glutamyl phosphate reductase compare
MPMX20_01596 -4.9 -19.6 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_04521 -4.9 -8.8 Acetylglutamate kinase compare
MPMX20_04496 -4.9 -6.7 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_00740 -4.8 -11.2 Carbamoyl-phosphate synthase large chain compare
MPMX20_03206 -4.8 -8.6 NADH-quinone oxidoreductase subunit N compare
MPMX20_03208 -4.8 -7.3 NADH-quinone oxidoreductase subunit L compare
MPMX20_01361 -4.8 -7.3 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_04499 -4.7 -16.7 Dihydroxy-acid dehydratase compare
MPMX20_03247 -4.7 -10.5 Amidophosphoribosyltransferase compare
MPMX20_04532 -4.7 -4.5 Met repressor compare
MPMX20_01097 -4.7 -9.5 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_03018 -4.7 -4.6 hypothetical protein compare
MPMX20_03681 -4.7 -17.4 Amino-acid acetyltransferase compare
MPMX20_04189 -4.7 -5.5 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_04520 -4.6 -12.9 Argininosuccinate lyase compare
MPMX20_01098 -4.6 -8.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_00514 -4.6 -7.0 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_03216 -4.6 -12.8 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_03004 -4.6 -12.8 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_04489 -4.6 -17.5 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_03210 -4.6 -7.6 NADH-quinone oxidoreductase subunit J compare
MPMX20_04278 -4.5 -3.1 3-dehydroquinate synthase compare
MPMX20_00556 -4.5 -12.4 Ornithine carbamoyltransferase subunit F compare
MPMX20_01351 -4.5 -5.3 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_02591 -4.5 -7.5 DNA-binding protein H-NS compare
MPMX20_04469 -4.5 -3.1 Adenylate cyclase compare
MPMX20_03217 -4.5 -6.1 NADH-quinone oxidoreductase subunit B compare
MPMX20_00093 -4.5 -8.1 Orotate phosphoribosyltransferase compare
MPMX20_01901 -4.5 -3.1 Integration host factor subunit alpha compare
MPMX20_01741 -4.5 -6.8 Dihydroorotase compare
MPMX20_03771 -4.5 -14.4 D-3-phosphoglycerate dehydrogenase compare
MPMX20_04523 -4.5 -10.7 Acetylornithine deacetylase compare
MPMX20_01030 -4.4 -10.7 Lon protease compare
MPMX20_03490 -4.4 -7.3 SsrA-binding protein compare
MPMX20_00711 -4.4 -15.2 Homoserine kinase compare
MPMX20_00544 -4.4 -10.9 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_00110 -4.4 -20.2 hypothetical protein compare
MPMX20_00976 -4.4 -5.2 Pyrroline-5-carboxylate reductase compare
MPMX20_03007 -4.3 -9.5 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_04650 -4.3 -3.0 tRNA modification GTPase MnmE compare
MPMX20_02574 -4.3 -3.0 putative intracellular septation protein A compare
MPMX20_01362 -4.3 -5.9 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_01357 -4.3 -7.3 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_01567 -4.2 -8.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_04140 -4.2 -10.9 Malate dehydrogenase compare
MPMX20_04497 -4.2 -10.6 HTH-type transcriptional regulator GltC compare
MPMX20_03006 -4.2 -9.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_01353 -4.2 -8.4 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_01349 -4.2 -7.9 Citrate synthase compare
MPMX20_00106 -4.1 -2.8 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_04522 -4.1 -10.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_02593 -4.1 -20.9 Regulator of RpoS compare
MPMX20_02494 -4.1 -10.5 Orotidine 5'-phosphate decarboxylase compare
MPMX20_04531 -4.1 -12.2 Cystathionine gamma-synthase compare
MPMX20_01549 -4.1 -4.8 ATP-binding/permease protein CydD compare
MPMX20_01029 -4.1 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_03211 -4.1 -6.1 NADH-quinone oxidoreductase subunit I compare
MPMX20_03002 -4.1 -15.2 Histidinol dehydrogenase compare
MPMX20_00109 -4.0 -23.7 hypothetical protein compare
MPMX20_00712 -4.0 -12.3 Threonine synthase compare
MPMX20_00105 -4.0 -16.6 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_00102 -4.0 -2.7 hypothetical protein compare
MPMX20_03310 -4.0 -4.7 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_04440 -3.9 -2.7 Transcription antitermination protein RfaH compare
MPMX20_03267 -3.9 -4.2 Phosphohistidine phosphatase SixA compare
MPMX20_01028 -3.9 -2.7 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_04483 -3.9 -2.7 Lipid III flippase compare
MPMX20_04275 -3.9 -2.7 Ribulose-phosphate 3-epimerase compare
MPMX20_04197 -3.9 -3.8 Trk system potassium uptake protein TrkA compare
MPMX20_01356 -3.9 -12.0 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_04279 -3.9 -4.5 Shikimate kinase 1 compare
MPMX20_03022 -3.8 -2.6 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_03010 -3.8 -3.7 UDP-glucose 4-epimerase compare
MPMX20_04119 -3.8 -2.6 DNA polymerase III subunit chi compare
MPMX20_01350 -3.8 -5.4 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_03021 -3.8 -7.7 hypothetical protein compare
MPMX20_03396 -3.8 -7.2 Nucleoside diphosphate kinase compare
MPMX20_03207 -3.8 -8.0 NADH-quinone oxidoreductase subunit M compare
MPMX20_02699 -3.8 -11.7 D-amino acid dehydrogenase conserved
MPMX20_04524 -3.7 -18.3 Phosphoenolpyruvate carboxylase compare
MPMX20_03013 -3.7 -11.2 dTDP-glucose 4,6-dehydratase compare
MPMX20_03003 -3.7 -11.3 Histidinol-phosphate aminotransferase compare
MPMX20_04276 -3.7 -7.8 DNA adenine methylase compare
MPMX20_02826 -3.6 -3.5 Cold shock-like protein CspB compare
MPMX20_01922 -3.6 -19.5 Phosphoenolpyruvate synthase conserved
MPMX20_04626 -3.6 -4.3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_04306 -3.6 -6.6 Glycerol-3-phosphate regulon repressor compare
MPMX20_04595 -3.5 -2.4 Glutamine synthetase compare
MPMX20_00710 -3.5 -15.4 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_00241 -3.5 -13.3 Glucose-6-phosphate isomerase compare
MPMX20_02768 -3.5 -4.3 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_01355 -3.5 -1.7 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_04110 -3.5 -7.1 Nitrogen regulatory protein compare
MPMX20_03012 -3.5 -13.3 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_01322 -3.5 -11.7 N-acetylglucosamine repressor compare
MPMX20_03020 -3.4 -9.6 hypothetical protein compare
MPMX20_04768 -3.4 -10.4 hypothetical protein compare
MPMX20_04444 -3.3 -2.0 Sec-independent protein translocase protein TatA compare
MPMX20_03408 -3.3 -3.2 Co-chaperone protein HscB compare
MPMX20_03685 -3.3 -3.2 RecBCD enzyme subunit RecC compare
MPMX20_03683 -3.3 -3.2 RecBCD enzyme subunit RecB compare
MPMX20_01352 -3.3 -9.8 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_03008 -3.2 -8.0 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_03005 -3.2 -9.1 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_00739 -3.2 -7.5 Carbamoyl-phosphate synthase small chain compare
MPMX20_01607 -3.2 -6.4 Outer membrane protein A compare
MPMX20_03742 -3.2 -10.6 HTH-type transcriptional regulator GalR compare
MPMX20_03001 -3.2 -12.7 ATP phosphoribosyltransferase compare
MPMX20_04642 -3.1 -3.0 Phosphate import ATP-binding protein PstB compare
MPMX20_02701 -3.1 -3.6 Fatty acid metabolism regulator protein compare
MPMX20_00812 -3.1 -8.0 Aconitate hydratase B compare
MPMX20_01570 -3.1 -3.5 Integration host factor subunit beta compare
MPMX20_02478 -3.1 -8.5 Putrescine export system ATP-binding protein SapF compare
MPMX20_02672 -3.0 -21.9 hypothetical protein compare
MPMX20_02063 -3.0 -13.0 Protein mlc compare
MPMX20_03591 -3.0 -8.7 Glucitol operon repressor compare
MPMX20_02477 -2.9 -4.4 Peptide transport system ATP-binding protein SapD compare
MPMX20_04498 -2.9 -11.8 L-threonine dehydratase biosynthetic IlvA compare
MPMX20_00768 -2.9 -11.2 3-isopropylmalate dehydrogenase compare
MPMX20_00807 -2.9 -2.8 Pyruvate dehydrogenase E1 component compare
MPMX20_04530 -2.9 -11.1 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_00230 -2.8 -10.3 Homoserine O-succinyltransferase compare
MPMX20_04038 -2.8 -8.0 Glucitol operon repressor compare
MPMX20_00086 -2.8 -3.6 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_02766 -2.8 -5.3 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_04482 -2.8 -11.8 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
MPMX20_03154 -2.8 -10.3 Inner membrane protein YejM compare
MPMX20_04518 -2.8 -7.1 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_02475 -2.8 -6.5 Putrescine export system permease protein SapB compare
MPMX20_01552 -2.8 -4.6 hypothetical protein compare
MPMX20_03382 -2.7 -3.2 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_00484 -2.7 -14.9 D-serine/D-alanine/glycine transporter conserved
MPMX20_03756 -2.7 -6.0 FAD assembly factor SdhE compare
MPMX20_02476 -2.7 -3.8 Putrescine export system permease protein SapC compare
MPMX20_03466 -2.7 -6.9 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_03132 -2.7 -9.1 Tagatose-6-phosphate kinase compare
MPMX20_04485 -2.6 -8.8 dTDP-fucosamine acetyltransferase compare
MPMX20_04344 -2.6 -1.9 hypothetical protein compare
MPMX20_04484 -2.6 -8.2 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
MPMX20_01156 -2.6 -4.5 hypothetical protein compare
MPMX20_00133 -2.5 -6.7 Mannitol operon repressor compare
MPMX20_00767 -2.5 -10.7 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_02510 -2.5 -14.0 Anthranilate synthase component 1 compare
MPMX20_02514 -2.5 -7.2 Tryptophan synthase alpha chain compare
MPMX20_02512 -2.5 -10.0 Tryptophan biosynthesis protein TrpCF compare
MPMX20_02734 -2.5 -9.7 Transcriptional regulator KdgR compare
MPMX20_03017 -2.5 -10.6 hypothetical protein compare
MPMX20_04385 -2.5 -8.4 hypothetical protein compare
MPMX20_02696 -2.5 -8.6 Murein tetrapeptide carboxypeptidase compare
MPMX20_00998 -2.5 -2.9 Sec translocon accessory complex subunit YajC compare
MPMX20_04641 -2.4 -3.5 Phosphate transport system permease protein PstA compare
MPMX20_00456 -2.4 -8.3 Modulator of FtsH protease HflC compare
MPMX20_02513 -2.3 -10.7 Tryptophan synthase beta chain compare
MPMX20_04003 -2.3 -5.0 Putative L-lactate dehydrogenase operon regulatory protein compare
MPMX20_00108 -2.3 -13.7 hypothetical protein compare
MPMX20_03852 -2.3 -12.1 Cystathionine beta-lyase MetC compare
MPMX20_00766 -2.3 -7.4 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_01942 -2.2 -6.2 HTH-type transcriptional repressor BluR compare
MPMX20_02309 -2.2 -5.8 hypothetical protein compare
MPMX20_00980 -2.2 -10.7 hypothetical protein compare
MPMX20_03923 -2.2 -3.8 hypothetical protein compare
MPMX20_04194 -2.1 -2.2 Peptide deformylase compare
MPMX20_02635 -2.1 -3.1 Release factor glutamine methyltransferase compare
MPMX20_00453 -2.1 -2.1 RNA-binding protein Hfq compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Alanine in Enterobacter sp. TBS_079

For carbon source D-Alanine across organisms