Experiment set9S331 for Enterobacter sp. TBS_079

Compare to:

D-Sorbitol carbon source

200 most important genes:

  gene name fitness t score description  
MPMX20_00693 -6.8 -4.7 Phosphoserine phosphatase compare
MPMX20_00831 -6.7 -4.6 RNA polymerase-binding transcription factor DksA compare
MPMX20_01566 -6.5 -11.7 Phosphoserine aminotransferase compare
MPMX20_03681 -6.4 -10.8 Amino-acid acetyltransferase compare
MPMX20_03771 -6.3 -10.5 D-3-phosphoglycerate dehydrogenase compare
MPMX20_01098 -6.2 -4.3 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_00927 -6.0 -13.4 Glutamate 5-kinase compare
MPMX20_04499 -6.0 -10.8 Dihydroxy-acid dehydratase compare
MPMX20_03264 -5.9 -4.1 Chorismate synthase compare
MPMX20_04520 -5.8 -5.6 Argininosuccinate lyase compare
MPMX20_01368 -5.7 -5.5 hypothetical protein compare
MPMX20_03468 -5.6 -6.7 T-protein compare
MPMX20_03006 -5.5 -8.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_00928 -5.5 -11.2 Gamma-glutamyl phosphate reductase compare
MPMX20_03247 -5.5 -9.2 Amidophosphoribosyltransferase compare
MPMX20_03007 -5.5 -7.5 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_00544 -5.5 -7.5 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_00226 -5.5 -7.5 Bifunctional purine biosynthesis protein PurH compare
MPMX20_04496 -5.4 -6.5 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_03003 -5.4 -11.0 Histidinol-phosphate aminotransferase compare
MPMX20_03354 -5.4 -11.6 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_04523 -5.4 -8.3 Acetylornithine deacetylase compare
MPMX20_00225 -5.4 -11.0 Phosphoribosylamine--glycine ligase compare
MPMX20_03426 -5.4 -14.8 Phosphoribosylformylglycinamidine synthase compare
MPMX20_03338 -5.4 -6.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_00712 -5.3 -11.4 Threonine synthase compare
MPMX20_04077 -5.3 -11.4 Argininosuccinate synthase compare
MPMX20_04522 -5.3 -6.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_02494 -5.2 -5.1 Orotidine 5'-phosphate decarboxylase compare
MPMX20_03004 -5.2 -10.6 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_00740 -5.2 -8.7 Carbamoyl-phosphate synthase large chain compare
MPMX20_00134 -5.2 -7.1 Mannitol-1-phosphate 5-dehydrogenase compare
MPMX20_01097 -5.1 -7.0 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_01567 -5.1 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_03005 -5.0 -8.4 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_01596 -5.0 -15.7 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_03002 -5.0 -14.4 Histidinol dehydrogenase compare
MPMX20_04531 -5.0 -11.1 Cystathionine gamma-synthase compare
MPMX20_04189 -4.9 -3.4 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_00711 -4.9 -13.7 Homoserine kinase compare
MPMX20_04552 -4.9 -4.7 ATP-dependent 6-phosphofructokinase isozyme 1 compare
MPMX20_00230 -4.9 -9.1 Homoserine O-succinyltransferase compare
MPMX20_03008 -4.9 -9.3 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_00093 -4.7 -5.6 Orotate phosphoribosyltransferase compare
MPMX20_04497 -4.7 -9.9 HTH-type transcriptional regulator GltC compare
MPMX20_01366 -4.6 -7.1 Tol-Pal system protein TolQ compare
MPMX20_00768 -4.6 -15.0 3-isopropylmalate dehydrogenase compare
MPMX20_00767 -4.6 -12.2 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_01367 -4.6 -8.8 Tol-Pal system protein TolR compare
MPMX20_04521 -4.6 -8.8 Acetylglutamate kinase compare
MPMX20_03001 -4.5 -14.5 ATP phosphoribosyltransferase compare
MPMX20_04442 -4.5 -7.6 Sec-independent protein translocase protein TatC compare
MPMX20_04278 -4.5 -3.1 3-dehydroquinate synthase compare
MPMX20_03018 -4.5 -5.3 hypothetical protein compare
MPMX20_04498 -4.5 -11.1 L-threonine dehydratase biosynthetic IlvA compare
MPMX20_03309 -4.4 -3.0 Phosphocarrier protein HPr compare
MPMX20_01362 -4.4 -5.2 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_04444 -4.4 -2.0 Sec-independent protein translocase protein TatA compare
MPMX20_01361 -4.3 -8.2 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_00710 -4.3 -17.7 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_03852 -4.3 -15.7 Cystathionine beta-lyase MetC compare
MPMX20_01549 -4.3 -2.9 ATP-binding/permease protein CydD compare
MPMX20_01950 -4.3 -4.1 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_01741 -4.3 -6.5 Dihydroorotase compare
MPMX20_04162 -4.2 -5.0 3-dehydroquinate dehydratase compare
MPMX20_01548 -4.2 -5.7 putative ABC transporter ATP-binding/permease protein compare
MPMX20_01349 -4.1 -7.9 Citrate synthase compare
MPMX20_03310 -4.1 -4.0 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_00739 -4.1 -6.3 Carbamoyl-phosphate synthase small chain compare
MPMX20_00766 -4.1 -9.3 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_00976 -4.1 -4.8 Pyrroline-5-carboxylate reductase compare
MPMX20_03019 -4.0 -21.6 hypothetical protein compare
MPMX20_02513 -3.9 -14.2 Tryptophan synthase beta chain compare
MPMX20_03986 -3.9 -4.3 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_03589 -3.8 -9.9 Sorbitol-6-phosphate 2-dehydrogenase conserved
MPMX20_03010 -3.8 -2.6 UDP-glucose 4-epimerase compare
MPMX20_01369 -3.8 -11.0 Tol-Pal system protein TolB compare
MPMX20_01028 -3.8 -2.6 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_04440 -3.8 -2.5 Transcription antitermination protein RfaH compare
MPMX20_04483 -3.7 -2.5 Lipid III flippase compare
MPMX20_00106 -3.7 -4.3 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_00556 -3.6 -9.8 Ornithine carbamoyltransferase subunit F compare
MPMX20_03022 -3.6 -3.5 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_04524 -3.6 -17.8 Phosphoenolpyruvate carboxylase compare
MPMX20_03466 -3.6 -9.0 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_02514 -3.5 -5.5 Tryptophan synthase alpha chain compare
MPMX20_04768 -3.5 -10.9 hypothetical protein compare
MPMX20_00110 -3.4 -20.9 hypothetical protein compare
MPMX20_04650 -3.4 -4.6 tRNA modification GTPase MnmE compare
MPMX20_04595 -3.3 -2.3 Glutamine synthetase compare
MPMX20_00109 -3.3 -21.7 hypothetical protein compare
MPMX20_03382 -3.3 -2.3 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_04469 -3.3 -5.4 Adenylate cyclase compare
MPMX20_04275 -3.3 -3.2 Ribulose-phosphate 3-epimerase compare
MPMX20_00102 -3.3 -3.9 hypothetical protein compare
MPMX20_04110 -3.2 -7.4 Nitrogen regulatory protein compare
MPMX20_01370 -3.2 -5.2 Peptidoglycan-associated lipoprotein compare
MPMX20_01334 -3.1 -11.0 Phosphoglucomutase compare
MPMX20_02574 -3.1 -4.7 putative intracellular septation protein A compare
MPMX20_04626 -3.1 -4.7 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_01551 -3.1 -8.9 Leucine-responsive regulatory protein compare
MPMX20_00721 -3.0 -4.0 Chaperone protein DnaJ compare
MPMX20_03308 -2.9 -8.2 Cysteine synthase A compare
MPMX20_03248 -2.9 -4.5 Colicin V production protein compare
MPMX20_04532 -2.9 -3.4 Met repressor compare
MPMX20_00708 -2.9 -5.9 Aerobic respiration control protein ArcA compare
MPMX20_00105 -2.9 -10.9 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_01029 -2.9 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_03685 -2.8 -4.7 RecBCD enzyme subunit RecC compare
MPMX20_04279 -2.8 -4.2 Shikimate kinase 1 compare
MPMX20_02512 -2.8 -12.2 Tryptophan biosynthesis protein TrpCF compare
MPMX20_04119 -2.7 -3.0 DNA polymerase III subunit chi compare
MPMX20_01355 -2.7 -1.5 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_03683 -2.6 -4.7 RecBCD enzyme subunit RecB compare
MPMX20_00453 -2.6 -2.8 RNA-binding protein Hfq compare
MPMX20_00769 -2.6 -10.0 2-isopropylmalate synthase compare
MPMX20_03021 -2.6 -9.3 hypothetical protein compare
MPMX20_01030 -2.6 -10.5 Lon protease compare
MPMX20_03013 -2.6 -12.2 dTDP-glucose 4,6-dehydratase compare
MPMX20_02511 -2.5 -10.3 Bifunctional protein TrpGD compare
MPMX20_01607 -2.5 -4.9 Outer membrane protein A compare
MPMX20_04530 -2.5 -9.8 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_01722 -2.5 -2.3 putative csgAB operon transcriptional regulatory protein compare
MPMX20_00812 -2.5 -8.0 Aconitate hydratase B compare
MPMX20_03705 -2.5 -9.4 Diaminopimelate decarboxylase compare
MPMX20_00197 -2.5 -2.6 tRNA-Tyr compare
MPMX20_02510 -2.4 -14.0 Anthranilate synthase component 1 compare
MPMX20_00899 -2.4 -2.0 Ribonuclease HI compare
MPMX20_04467 -2.4 -7.1 Diaminopimelate epimerase compare
MPMX20_00807 -2.4 -3.6 Pyruvate dehydrogenase E1 component compare
MPMX20_01969 -2.4 -5.3 Carbonic anhydrase 1 compare
MPMX20_02766 -2.3 -4.4 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_01901 -2.3 -3.1 Integration host factor subunit alpha compare
MPMX20_01156 -2.3 -4.9 hypothetical protein compare
MPMX20_01382 -2.3 -2.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_04642 -2.2 -3.0 Phosphate import ATP-binding protein PstB compare
MPMX20_00241 -2.2 -11.0 Glucose-6-phosphate isomerase compare
MPMX20_04262 -2.2 -8.1 Acetylornithine/succinyldiaminopimelate aminotransferase compare
MPMX20_03490 -2.2 -3.8 SsrA-binding protein compare
MPMX20_04197 -2.1 -6.1 Trk system potassium uptake protein TrkA compare
MPMX20_03267 -2.1 -4.2 Phosphohistidine phosphatase SixA compare
MPMX20_00108 -2.1 -13.8 hypothetical protein compare
MPMX20_02476 -2.0 -3.0 Putrescine export system permease protein SapC compare
MPMX20_04557 -2.0 -8.9 Sensor histidine kinase CpxA compare
MPMX20_00745 -2.0 -5.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_04276 -2.0 -6.6 DNA adenine methylase compare
MPMX20_04597 -2.0 -9.1 DNA-binding transcriptional regulator NtrC compare
MPMX20_02825 -2.0 -2.7 Cold shock-like protein CspB compare
MPMX20_03408 -1.9 -1.9 Co-chaperone protein HscB compare
MPMX20_02475 -1.9 -5.1 Putrescine export system permease protein SapB compare
MPMX20_01768 -1.9 -3.5 Large ribosomal RNA subunit accumulation protein YceD compare
MPMX20_02591 -1.9 -4.6 DNA-binding protein H-NS compare
MPMX20_04344 -1.9 -1.8 hypothetical protein compare
MPMX20_03012 -1.8 -10.6 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_03479 -1.8 -2.3 30S ribosomal protein S16 compare
MPMX20_04639 -1.8 -1.9 Phosphate-binding protein PstS compare
MPMX20_04140 -1.8 -8.1 Malate dehydrogenase compare
MPMX20_04529 -1.8 -5.8 5,10-methylenetetrahydrofolate reductase compare
MPMX20_01552 -1.8 -5.0 hypothetical protein compare
MPMX20_03753 -1.8 -5.6 Tyrosine recombinase XerD compare
MPMX20_03020 -1.8 -5.2 hypothetical protein compare
MPMX20_03469 -1.7 -8.7 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive compare
MPMX20_03706 -1.7 -8.2 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX20_03211 -1.7 -4.4 NADH-quinone oxidoreductase subunit I compare
MPMX20_00086 -1.7 -3.7 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_04443 -1.7 -1.7 Sec-independent protein translocase protein TatB compare
MPMX20_04641 -1.7 -2.9 Phosphate transport system permease protein PstA compare
MPMX20_02032 -1.6 -7.2 NAD(P) transhydrogenase subunit beta compare
MPMX20_01984 -1.6 -2.5 Ribonuclease T compare
MPMX20_04127 -1.6 -9.4 Glutamate synthase [NADPH] small chain compare
MPMX20_04489 -1.6 -8.5 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_03642 -1.5 -7.5 Sulfite reductase [NADPH] hemoprotein beta-component compare
MPMX20_01734 -1.5 -7.5 Lipid A biosynthesis lauroyltransferase compare
MPMX20_03407 -1.5 -3.7 Chaperone protein HscA compare
MPMX20_00773 -1.5 -8.1 Catabolite repressor/activator compare
MPMX20_01357 -1.5 -2.8 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_03390 -1.5 -5.2 Outer membrane protein assembly factor BamB compare
MPMX20_03463 -1.5 -6.2 Ribosomal large subunit pseudouridine synthase D compare
MPMX20_04465 -1.4 -4.4 Tyrosine recombinase XerC compare
MPMX20_04463 -1.4 -5.0 DNA helicase II compare
MPMX20_00747 -1.4 -2.8 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_02593 -1.4 -9.5 Regulator of RpoS compare
MPMX20_02478 -1.4 -6.3 Putrescine export system ATP-binding protein SapF compare
MPMX20_01354 -1.4 -2.5 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_02031 -1.4 -9.4 NAD(P) transhydrogenase subunit alpha compare
MPMX20_02645 -1.4 -5.9 Ribosome-binding ATPase YchF compare
MPMX20_00135 -1.4 -7.9 PTS system mannitol-specific EIICBA component compare
MPMX20_00514 -1.4 -5.9 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_00775 -1.4 -3.0 Ribosomal RNA small subunit methyltransferase H compare
MPMX20_01356 -1.4 -6.3 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_01377 -1.4 -6.8 Quinolinate synthase A compare
MPMX20_04393 -1.4 -4.9 Low-affinity inorganic phosphate transporter 1 compare
MPMX20_04126 -1.3 -10.1 Glutamate synthase [NADPH] large chain compare
MPMX20_03355 -1.3 -5.1 Phosphoribosylglycinamide formyltransferase compare
MPMX20_03588 -1.3 -4.0 PTS system glucitol/sorbitol-specific EIIA component compare
MPMX20_02477 -1.3 -3.5 Peptide transport system ATP-binding protein SapD compare
MPMX20_01286 -1.3 -1.2 Sec-independent protein translocase protein TatE compare
MPMX20_03208 -1.3 -5.9 NADH-quinone oxidoreductase subunit L compare
MPMX20_00133 -1.2 -4.6 Mannitol operon repressor compare
MPMX20_03641 -1.2 -3.8 Phosphoadenosine phosphosulfate reductase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Sorbitol in Enterobacter sp. TBS_079

For carbon source D-Sorbitol across organisms